Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00717 ATGAAGAAGATGAATATTGGATTAAAGTCTTATAATAATAACAATAACAATGACAGTGAAAATCAAATCCTCAAAGACGATGCCGGTAGCCAATATAGTCTTACCGGAATCATGCTTCCACCTCTCGGCGCCGCCACCAACAGCCACACCAAGCTCCCACGTTGGATCATCTCCCCTAACAACCGCACTTATCAACAATGGTGCAAGTTTTTGATGATATGGGTTTTCTACACTGCATGGGTTTGTCCTTTTGAATTTGGGTTTCTCAAGGCATCAAAGGGTCCAATCACTTATGTAGACAACATTGTGAATGGATTTTTTTTTGCTGACATTGTTCTTACCTTCTTTGTTGCCTATTTTGACCAAACTACTTTTTTACTTGTCGTCGATCAAAAGAAAATCGCAAAGAGATATGCGAAATCCTGGTTACTCTTTGATTTTGTCTCTATCATTCCGTATGAATTAGTTAGGAAACACTTGCCACCAACACTCCAGACATATGGTTACTTCAATATTCTTCGCCTTTGGCGCCTTCATAGAGCCAGTGCTATGTTTTCCAGGTTAGAAAAGGACAGGAATTATAACTATTTTTGGGTGCGATGTTTAAAACTTACATGTGTAACGCTATTTTCGGCGCATGTAGCAGCATGTTTTTTCTATTTTCTTGCTACAGGACACAACCATAAAAAAGTTACATGGTTATCACTTGTTCCAAATGGTTCTGACCTAAGTATGTGGGATGGTTATGTAACATCATTATATTGGTCTTTAGTGACTCTTTCATCAGTCGGTTATGGAGATTTGCATCCTGTTAATACAGATGAAATGGTTTTTTGCATTCTTTATACAATATTCAATTTTGGACTTTCTGCATATCTTATAGGAAACATGACCAATTTGGTTGTTCATTGGACAGAAAAAACTAAGAGATATAGAGATACTGTCCAAGCTGCGACGAATTTTGCTCATAGGAATCAGTTACCTAAACGTTTGCAAGATCAGATATTTTCTCATTTTCATATGAAGTACAAAACAGATTTAGAAGGGTTGGAGCAACAAGAAATAATTAGTTCCCTTCCGAAAGCCATTCAGTCGAGCATCGCACACCACCGGTTCTTTGAGGTTGTCAAAGAAGCATACTTGTTTAAGGGGGTGTCAGATGACCTACTATTTCAACTGGTGACAGAGTTGAAGGCTGAGTTTTTTCCTCCAAGAGAAGATGTAATATTGCAGAATGAATCACCAACAGATTTTTATATATTATCTGTTGGATCTGTTGCTTTTAAAGAAATAAAGACATCTCAGGTTTTTGGAGAAATAGGAGTGCTATGTTACAGGCCACAACTTTTTACAGCTCGGACCAAGCAATTAAGCCAGATCTTGCGTTTGAGTCGAACATCATTTCTAAACATTGTTCACAACAATGTTGAAGACGGAACAATTATCATGAACAATTTTCTCAATCATGTGCAAGATTTAAGTTTAACGTACCCTATCATGGTAGGATTTATGGCTGAAATAGAGACATATTTGAAAACAGGCAAAATGGATTTGCCTATAAGTTTAGTATTTGCAGCTAACAAAGGTGATGATATGTTGTTGCATCAATTGCTGAAAAAAGGCTCAGATCCAAATGAAATAGATCACAAAACTGGAAAGACGCCACTGCATGTTGCAGCTTTTCAAGGCAGTGATCATTGTGTGGTTTTGCTTCTAGAATTTGGGGCTGATCCCAACATACAAGACTTTGAAGGAAATATATCACTATGTGAAGCAATGAAAGGAGGGCATGAATTAGTGAAAAAACTACTCATAGACAATGGTGCAGATATATCTTACGCTAATGTGGCTCCTTTAGCGATCTTCGCTGTCGAGAAAAATGACATTCAATTGCTAAAAGATGTTATGAAACTTGGTGGTGATATTGTGACAAACTCCACAAAAGAAGGAACCACTGCACTTCATGCTGCTGTATGTGAAGGAAATTTTGAAATAGTTAAGTTTCTTGTAGAACAAGGAGCAGATATGGATAAGCAAGATAAAGTCGGTTGGACTCCAAGAACTTTAGCAGATCATCAATGCCATGAAGAGATAAAAAATATGTTTAAAGAAATTGAGCAAGATGATAAAATTTCATATGTTATTCCTCCAAATCCAAATAAAAATGAGGGGTCAGTTATTGCAAAGTCTTACAGTGACCCTTCTTTGCTAGCTATGTCTCAAGGTGGTAGCTTCCGACCTAATCAAGAGTTGACATCGTTGAATAATCATCAAGGAAGAAGGGTTAGCCCTTTTAGGAATTCCGTTTTTGGAATGAATGCAACTGCTAATCAAGATAATTATAATTTTCCTGCATCTCAAGACAGTTCCACTACAACTTCTACACGAGCGAATGAATTGCGGATTAGAGTAATTCTTAGCCATGAAGAAAAAAGTGAACATCGTAAAAGGCTTGTTTTTCTACCACAGTCCCTTCAAGAGCTGCTAGATGTTGGTGCTCAAAAGCTTGGCTTCTCTCCCTCTAAAGTTTTGACTGAAGATGGAGCTGAAATTGAAGATATTAACTTGATTAGAGAGGGTGATCATCTTATTCTTGTATGA 2601 0.3729 MKKMNIGLKSYNNNNNNDSENQILKDDAGSQYSLTGIMLPPLGAATNSHTKLPRWIISPNNRTYQQWCKFLMIWVFYTAWVCPFEFGFLKASKGPITYVDNIVNGFFFADIVLTFFVAYFDQTTFLLVVDQKKIAKRYAKSWLLFDFVSIIPYELVRKHLPPTLQTYGYFNILRLWRLHRASAMFSRLEKDRNYNYFWVRCLKLTCVTLFSAHVAACFFYFLATGHNHKKVTWLSLVPNGSDLSMWDGYVTSLYWSLVTLSSVGYGDLHPVNTDEMVFCILYTIFNFGLSAYLIGNMTNLVVHWTEKTKRYRDTVQAATNFAHRNQLPKRLQDQIFSHFHMKYKTDLEGLEQQEIISSLPKAIQSSIAHHRFFEVVKEAYLFKGVSDDLLFQLVTELKAEFFPPREDVILQNESPTDFYILSVGSVAFKEIKTSQVFGEIGVLCYRPQLFTARTKQLSQILRLSRTSFLNIVHNNVEDGTIIMNNFLNHVQDLSLTYPIMVGFMAEIETYLKTGKMDLPISLVFAANKGDDMLLHQLLKKGSDPNEIDHKTGKTPLHVAAFQGSDHCVVLLLEFGADPNIQDFEGNISLCEAMKGGHELVKKLLIDNGADISYANVAPLAIFAVEKNDIQLLKDVMKLGGDIVTNSTKEGTTALHAAVCEGNFEIVKFLVEQGADMDKQDKVGWTPRTLADHQCHEEIKNMFKEIEQDDKISYVIPPNPNKNEGSVIAKSYSDPSLLAMSQGGSFRPNQELTSLNNHQGRRVSPFRNSVFGMNATANQDNYNFPASQDSSTTTSTRANELRIRVILSHEEKSEHRKRLVFLPQSLQELLDVGAQKLGFSPSKVLTEDGAEIEDINLIREGDHLILV 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00717 866 Gene3D Helix hairpin bin 303 369 - -
Trre1g00717 866 PRINTS Ankyrin repeat signature 552 567 IPR002110 GO:0005515
Trre1g00717 866 PRINTS Ankyrin repeat signature 665 679 IPR002110 GO:0005515
Trre1g00717 866 PRINTS EAG/ELK/ERG potassium channel family signature 249 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre1g00717 866 PRINTS EAG/ELK/ERG potassium channel family signature 100 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre1g00717 866 PRINTS EAG/ELK/ERG potassium channel family signature 293 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre1g00717 866 PRINTS EAG/ELK/ERG potassium channel family signature 77 84 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre1g00717 866 Pfam Ion transport protein 66 308 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre1g00717 866 CDD CAP_ED 381 483 IPR000595 -
Trre1g00717 866 Pfam KHA, dimerisation domain of potassium ion channel 802 865 IPR021789 -
Trre1g00717 866 ProSiteProfiles KHA domain profile. 803 866 IPR021789 -
Trre1g00717 866 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Trre1g00717 866 Pfam Ankyrin repeats (3 copies) 522 582 IPR002110 GO:0005515
Trre1g00717 866 Pfam Ankyrin repeats (3 copies) 592 680 IPR002110 GO:0005515
Trre1g00717 866 PANTHER POTASSIUM CHANNEL AKT1 30 865 IPR045319 GO:0005249|GO:0006813
Trre1g00717 866 Gene3D - 64 302 - -
Trre1g00717 866 SUPERFAMILY Voltage-gated potassium channels 60 302 - -
Trre1g00717 866 Gene3D - 518 704 IPR036770 -
Trre1g00717 866 ProSiteProfiles Ankyrin repeat region circular profile. 551 582 - -
Trre1g00717 866 ProSiteProfiles cAMP/cGMP binding motif profile. 381 489 IPR000595 -
Trre1g00717 866 SMART cnmp_10 381 487 IPR000595 -
Trre1g00717 866 SMART ANK_2a 649 678 IPR002110 GO:0005515
Trre1g00717 866 SMART ANK_2a 584 613 IPR002110 GO:0005515
Trre1g00717 866 SMART ANK_2a 551 580 IPR002110 GO:0005515
Trre1g00717 866 SMART ANK_2a 517 546 IPR002110 GO:0005515
Trre1g00717 866 SUPERFAMILY cAMP-binding domain-like 306 489 IPR018490 -
Trre1g00717 866 ProSiteProfiles Ankyrin repeat region circular profile. 649 681 - -
Trre1g00717 866 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Trre1g00717 866 SUPERFAMILY Ankyrin repeat 499 705 IPR036770 -
Trre1g00717 866 ProSiteProfiles Ankyrin repeat profile. 649 681 IPR002110 GO:0005515
Trre1g00717 866 FunFam Potassium channel KAT2 370 494 - -
Trre1g00717 866 Gene3D Jelly Rolls 370 492 IPR014710 -
Trre1g00717 866 FunFam Potassium channel KAT3 66 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00717 Trre-Chr1 5399087 5403137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00717 17 865 Ion Channels AT2G25600 52.069 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00717 K21867 - gmx:100809960 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00717 1 5399087 5403137 Trre1g00717 1 5399087 5403137 ECH
Trre1g00717 1 5399087 5403137 Trre5g05262 5 53636986 53641960 PCT