Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00716 ATGAAGAAGATGAATATTGGATTAAAGTCTTATAATAATAACAATAACAATGACAGTGAAAATCAAATCCTCAAAGACGATGCCGGTAGCCAATATAGTCTTACCGGAATCATGCTTCCACCTCTCGGCGCCGCCACCAACAGCCACACCAAGCTCCCACGTTGGATCATCTCCCCTAACAACCGCACTTATCAACAATGGTGCAAGTTTTTGATGATATGGGTTTTCTACACTGCATGGGTTTGTCCTTTTGAATTTGGGTTTCTCAAGGCATCAAAGGGTCCAATCACTTATGTAGACAACATTGTGAATGGATTTTTTTTTGCTGACATTGTTCTTACCTTCTTTGTTGCCTATTTTGACCAAACTACTTTTTTACTTGTCGTCGATCAAAAGAAAATCGCAAAGAGATATGCGAAATCCTGGTTACTCTTTGATTTTGTCTCTATCATTCCGTATGAATTAGTTAGGAAACACTTGCCACCAACACTCCAGACATATGGTTACTTCAATATTCTTCGCCTTTGGCGCCTTCATAGAGCCAGTGCTATGTTTTCCAGGTTAGAAAAGGACAGGAATTATAACTATTTTTGGGTGCGATGTTTAAAACTTACATGTGTAACGCTATTTTCGGCGCATGTAGCAGCATGTTTTTTCTATTTTCTTGCTACAGGACACAACCATAAAAAAGTTACATGGTTATCACTTGTTCCAAATGGTTCTGACCTAAGTATGTGGGATGGTTATGTAACATCATTATATTGGTCTTTAGTGACTCTTTCATCAGTCGGTTATGGAGATTTGCATCCTGTTAATACAGATGAAATGGTTTTTTGCATTCTTTATACAATATTCAATTTTGGACTTTCTGCATATCTTATAGGAAACATGACCAATTTGGTTGTTCATTGGACAGAAAAAACTAAGAGATATAGAGATACTGTCCAAGCTGCGACGAATTTTGCTCATAGGAATCAGTTACCTAAACGTTTGCAAGATCAGATATTTTCTCATTTTCATATGAAGTACAAAACAGATTTAGAAGGGTTGGAGCAACAAGAAATAATTAGTTCCCTTCCGAAAGCCATTCAGTCGAGCATCGCACACCACCGGTTCTTTGAGGTTGTCAAAGAAGCATACTTGTTTAAGGGGGTGTCAGATGACCTACTATTTCAACTGGTGACAGAGTTGAAGGCTGAGTTTTTTCCTCCAAGAGAAGATGTAATATTGCAGAATGAATCACCAACAGATTTTTATATATTATCTGTTGGATCTGTTACACTTAGCATTCAAGAAAACGGAATAGAACGGGCTTTTAAAGAAATAAAGACATCTCAGGTTTTTGGAGAAATAGGAGTGCTATGTTACAGGCCACAACTTTTTACAGCTCGGACCAAGCAATTAAGCCAGATCTTGCGTTTGAGTCGAACATCATTTCTAAACATTGTTCACAACAATGTTGAAGACGGAACAATTATCATGAACAATTTTCTCAATCATGTGCAAGATTTAAGTTTAACGTACCCTATCATGGTAGGATTTATGGCTGAAATAGAGACATATTTGAAAACAGGCAAAATGGATTTGCCTATAAGTTTAGTATTTGCAGCTAACAAAGGTGATGATATGTTGTTGCATCAATTGCTGAAAAAAGGCTCAGATCCAAATGAAATAGATCACAAAACTGGAAAGACGCCACTGCATGTTGCAGCTTTTCAAGGCAGTGATCATTGTGTGGTTTTGCTTCTAGAATTTGGGGCTGATCCCAACATACAAGACTTTGAAGGAAATATATCACTATGTGAAGCAATGAAAGGAGGGCATGAATTAGTGAAAAAACTACTCATAGACAATGGTGCAGATATATCTTACGCTAATGTGGCTCCTTTAGCGATCTTCGCTGTCGAGAAAAATGACATTCAATTGCTAAAAGATGTTATGAAACTTGGTGGTGATATTGTGACAAACTCCACAAAAGAAGGAACCACTGCACTTCATGCTGCTGTATGTGAAGGAAATTTTGAAATAGTTAAGTTTCTTGTAGAACAAGGAGCAGATATGGATAAGCAAGATAAAGTCGGTTGGACTCCAAGAACTTTAGCAGATCATCAATGCCATGAAGAGATAAAAAATATGTTTAAAGAAATTGAGCAAGATGATAAAATTTCATATGTTATTCCTCCAAATCCAAATAAAAATGAGGGGTCAGTTATTGCAAAGTCTTACAGTGACCCTTCTTTGCTAGCTATGTCTCAAGGTGGTAGCTTCCGACCTAATCAAGAGTTGACATCGTTGAATAATCATCAAGGAAGAAGGGTTAGCCCTTTTAGGAATTCCGTTTTTGGAATGAATGCAACTGCTAATCAAGATAATTATAATTTTCCTGCATCTCAAGACAGTTCCACTACAACTTCTACACGAGCGAATGAATTGCGGATTAGAGTAATTCTTAGCCATGAAGAAAAAAGTGAACATCGTAAAAGGCTTGTTTTTCTACCACAGTCCCTTCAAGAGCTGCTAGATGTTGGTGCTCAAAAGCTTGGCTTCTCTCCCTCTAAAGTTTTGACTGAAGATGGAGCTGAAATTGAAGATATTAACTTGATTAGAGAGGGTGATCATCTTATTCTTGTATGA 2634 0.3732 MKKMNIGLKSYNNNNNNDSENQILKDDAGSQYSLTGIMLPPLGAATNSHTKLPRWIISPNNRTYQQWCKFLMIWVFYTAWVCPFEFGFLKASKGPITYVDNIVNGFFFADIVLTFFVAYFDQTTFLLVVDQKKIAKRYAKSWLLFDFVSIIPYELVRKHLPPTLQTYGYFNILRLWRLHRASAMFSRLEKDRNYNYFWVRCLKLTCVTLFSAHVAACFFYFLATGHNHKKVTWLSLVPNGSDLSMWDGYVTSLYWSLVTLSSVGYGDLHPVNTDEMVFCILYTIFNFGLSAYLIGNMTNLVVHWTEKTKRYRDTVQAATNFAHRNQLPKRLQDQIFSHFHMKYKTDLEGLEQQEIISSLPKAIQSSIAHHRFFEVVKEAYLFKGVSDDLLFQLVTELKAEFFPPREDVILQNESPTDFYILSVGSVTLSIQENGIERAFKEIKTSQVFGEIGVLCYRPQLFTARTKQLSQILRLSRTSFLNIVHNNVEDGTIIMNNFLNHVQDLSLTYPIMVGFMAEIETYLKTGKMDLPISLVFAANKGDDMLLHQLLKKGSDPNEIDHKTGKTPLHVAAFQGSDHCVVLLLEFGADPNIQDFEGNISLCEAMKGGHELVKKLLIDNGADISYANVAPLAIFAVEKNDIQLLKDVMKLGGDIVTNSTKEGTTALHAAVCEGNFEIVKFLVEQGADMDKQDKVGWTPRTLADHQCHEEIKNMFKEIEQDDKISYVIPPNPNKNEGSVIAKSYSDPSLLAMSQGGSFRPNQELTSLNNHQGRRVSPFRNSVFGMNATANQDNYNFPASQDSSTTTSTRANELRIRVILSHEEKSEHRKRLVFLPQSLQELLDVGAQKLGFSPSKVLTEDGAEIEDINLIREGDHLILV 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00716 877 FunFam Potassium channel KAT3 66 303 - -
Trre1g00716 877 SMART ANK_2a 660 689 IPR002110 GO:0005515
Trre1g00716 877 SMART ANK_2a 595 624 IPR002110 GO:0005515
Trre1g00716 877 SMART ANK_2a 562 591 IPR002110 GO:0005515
Trre1g00716 877 SMART ANK_2a 528 557 IPR002110 GO:0005515
Trre1g00716 877 FunFam Potassium channel KAT2 370 505 - -
Trre1g00716 877 Pfam Ion transport protein 66 308 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre1g00716 877 Gene3D - 529 715 IPR036770 -
Trre1g00716 877 SUPERFAMILY cAMP-binding domain-like 306 500 IPR018490 -
Trre1g00716 877 ProSiteProfiles Ankyrin repeat region circular profile. 660 692 - -
Trre1g00716 877 SMART cnmp_10 381 498 IPR000595 -
Trre1g00716 877 Pfam Cyclic nucleotide-binding domain 401 485 IPR000595 -
Trre1g00716 877 Pfam KHA, dimerisation domain of potassium ion channel 813 876 IPR021789 -
Trre1g00716 877 ProSiteProfiles Ankyrin repeat region circular profile. 562 593 - -
Trre1g00716 877 SUPERFAMILY Voltage-gated potassium channels 60 302 - -
Trre1g00716 877 Gene3D Helix hairpin bin 303 369 - -
Trre1g00716 877 Gene3D Jelly Rolls 370 503 IPR014710 -
Trre1g00716 877 ProSiteProfiles Ankyrin repeat profile. 660 692 IPR002110 GO:0005515
Trre1g00716 877 PRINTS Ankyrin repeat signature 676 690 IPR002110 GO:0005515
Trre1g00716 877 PRINTS Ankyrin repeat signature 563 578 IPR002110 GO:0005515
Trre1g00716 877 Pfam Ankyrin repeats (3 copies) 533 593 IPR002110 GO:0005515
Trre1g00716 877 Pfam Ankyrin repeats (3 copies) 603 691 IPR002110 GO:0005515
Trre1g00716 877 SUPERFAMILY Ankyrin repeat 510 716 IPR036770 -
Trre1g00716 877 Gene3D - 64 302 - -
Trre1g00716 877 PRINTS EAG/ELK/ERG potassium channel family signature 100 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre1g00716 877 PRINTS EAG/ELK/ERG potassium channel family signature 77 84 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre1g00716 877 PRINTS EAG/ELK/ERG potassium channel family signature 249 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre1g00716 877 PRINTS EAG/ELK/ERG potassium channel family signature 293 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre1g00716 877 ProSiteProfiles KHA domain profile. 814 877 IPR021789 -
Trre1g00716 877 ProSiteProfiles Ankyrin repeat profile. 562 594 IPR002110 GO:0005515
Trre1g00716 877 ProSiteProfiles cAMP/cGMP binding motif profile. 381 500 IPR000595 -
Trre1g00716 877 ProSiteProfiles Ankyrin repeat profile. 595 627 IPR002110 GO:0005515
Trre1g00716 877 CDD CAP_ED 381 494 IPR000595 -
Trre1g00716 877 PANTHER POTASSIUM CHANNEL AKT1 30 876 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00716 Trre-Chr1 5399087 5403137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00716 17 876 Ion Channels AT2G25600 52.414 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00716 K21867 - gmx:100809960 1054.66