Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00712 ATGGCAAAGAAGAAGAACCCCATGGTGTTTTTGAATGTGTCTATAGATGGGGATCCGGGTGAAAGAATGGTTTTTGAGCTTTTCTATGATGTTGCTCCAAAGACTGCTGAAAATTTCCGTGCACTGTGTACCGGAGAAAGAGGAGTCAGTCCCAATACTGGAAAATCACTGCACTATAAGGGTTCTTTCTTCCATCAGATTGTAAAAGGCTCTATTGTTAGGGGTGGTGATTTTATCAATCGAAATGGGACTGGTGGAGAAAGCATATACCCCAAGTTCCCAGACGAGTCTCCTAGGCTAAAGCATGATTCTCCTGGCCTTCTATCCATGGCAATTGCGGATCGTGACACTCTTGGTTCACATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGGAAGTATGTAGTTTTTGGCAAGCTTGTGCAAGGTTATGATATCTTGAAGAAAATTGAAGATGTAGGTGATGAAGAAGGACTCCCAACCGTAACTGTTAAAATAATTAATTGTGGTGAACATAATGAGGATACAAAGAAGACACAAAAATTAAAAAGTGGAAGGAACGGATCTTCTGAAGCCAATAGTCATGAAGTGCGGAGGAAGGGAAAGCATAAGAAATCTTCAGGACACCGAAGGAAAAAGAGAAAACATTACTCATCAGAATCAGATAGCTCCTCAGATTCGGACATTGAATCTTCATCAAGTGAATCTTCATTAAGTGATAGTGACTCTGACTCAGATATGTCCTCATCATCTTACACAAGTTCATCTAGTGATGACAGGCGGAGGAAAAGAAAGAGATCTAAGAAAGATAAACGTAGACATGGAAAAAGGAGAGATAAACGTCGAGAAAAGCGGCGAAGGAAACAAGATAAGAGATCGAAACGTAAATCAAGGAGGGAATCAAGCAGTCCTACGGATGCAGGTAGTGCAAGTAAGAGCGACGATATCTCCAATGGCAAAGGTCTTGATACTCAAGGGAGAATTCAGAAGCATAAAGATCATTCTCAGAAAGATGCTGAAGTCCAGTCATCCTCAGTTTTGGAGAAAGAATTGCCTCCCATGAGTCATAAAAGGAGGGAGGTGGATGACATGCTAGGCGAGGAAGAATTCCCAAAAGAAAATGGAGCACAACATAGCAACGGCATTGGGGTCAACTATAGACCTGACAGAAGTGAAGAGAGGCAGCCTGATGTGATGGATGATAATCCAGGAAAATCTAGGAGTCGAAGCATGAGCCCTAAGCAAACTGTGAGCAAGAGTATGAGTATTAGTCCCAAGTGTGTGTGCAAAAGCCCGAGCATTAGTCCAAAAGGGAGGTTGAGCAGAAGTCCAAGTGGTAGTAAGAGCCCACAGGCTCCATCACGGAGGAGTTTGAGCAGGAGTCCTGTTAGAAGCATCAGCAGAAGCCCCGTGAGAGGGAGGAATGCGAGAAGTATCAGTAGAAGCCCTATAAGAACACACATTCATAGAAGTGTCAGCAAGAGCCCTGTGAGAAGTCCTGACCGTAGAAGTTTTAGCCAGAGTCCTGCTAGATCTGTCTCTCTAAGCCGCAGAAGTAGAAGTTCTGCTAGAGTATCATCACGAAGAACAGTCAGTAGGAGCCCTGTGAGGATGTCAAGAAAGAGCATCAGCAGGAGTCCAATTAGGTCGTCTGCTAGAAGCCTCAGCAGAAGTTCTGGCCGAGTTCCTTTGAGAAGCATTAGCCGAAGTCCTGTCAGAGTGGCAAGCAGAGGCAATCGCCGCAGCTATTCCAGGAGTCGTAGCCCTATTCGTAGTAGAGAAAGGACACCTCGTGAAAGGAGTCTGTCAAGGAGCGTGTCACCTGATGCCTCACCAAAACGTATCAGGAGGGGAAGAGGTTTCAGTGAACGATACTCTTATGCTAGAAAATATAGAACACCCTCTCAGTCTCCTGTGAGGTACCGCTATAATGGAAGGAATGACCGGGACAGATATTCAGGATACAGAAGGTTCTCCCCTAGACGTTTTAGGAGCCCACCGCCCCGGAGAAGAACTCCACCAAGGTACCGAAGTAGGAGAAGCAGGACACCATCTGTATCACGCAGCCCACCTTACCGAGCACGTCGGTATAGCCCAAGCCTCAGCCCAGTTCGCAACCGCTCACCTGCTCGTAAGGATAGGCGCATATCATTATCTCCCAGCAGGAGTCCATCTCGATCCAGGTCCAGGTCTTCAGTGGAATTACAGTCTCCAAAAAAAGCAAGCAGAGATAACAGGTCAAGGTCTTTCTCTGGAAGCTCAGGTGGAAAGAAAGGCCTGGTCTCGTATGGAAATGGCTCTCCTGATTCAATTCATAGGTGA 2328 0.4562 MAKKKNPMVFLNVSIDGDPGERMVFELFYDVAPKTAENFRALCTGERGVSPNTGKSLHYKGSFFHQIVKGSIVRGGDFINRNGTGGESIYPKFPDESPRLKHDSPGLLSMAIADRDTLGSHFIITLKADHHLDRKYVVFGKLVQGYDILKKIEDVGDEEGLPTVTVKIINCGEHNEDTKKTQKLKSGRNGSSEANSHEVRRKGKHKKSSGHRRKKRKHYSSESDSSSDSDIESSSSESSLSDSDSDSDMSSSSYTSSSSDDRRRKRKRSKKDKRRHGKRRDKRREKRRRKQDKRSKRKSRRESSSPTDAGSASKSDDISNGKGLDTQGRIQKHKDHSQKDAEVQSSSVLEKELPPMSHKRREVDDMLGEEEFPKENGAQHSNGIGVNYRPDRSEERQPDVMDDNPGKSRSRSMSPKQTVSKSMSISPKCVCKSPSISPKGRLSRSPSGSKSPQAPSRRSLSRSPVRSISRSPVRGRNARSISRSPIRTHIHRSVSKSPVRSPDRRSFSQSPARSVSLSRRSRSSARVSSRRTVSRSPVRMSRKSISRSPIRSSARSLSRSSGRVPLRSISRSPVRVASRGNRRSYSRSRSPIRSRERTPRERSLSRSVSPDASPKRIRRGRGFSERYSYARKYRTPSQSPVRYRYNGRNDRDRYSGYRRFSPRRFRSPPPRRRTPPRYRSRRSRTPSVSRSPPYRARRYSPSLSPVRNRSPARKDRRISLSPSRSPSRSRSRSSVELQSPKKASRDNRSRSFSGSSGGKKGLVSYGNGSPDSIHR 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00712 775 MobiDBLite consensus disorder prediction 226 257 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 327 341 - -
Trre1g00712 775 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Trre1g00712 775 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Trre1g00712 775 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Trre1g00712 775 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Trre1g00712 775 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413|GO:0003755
Trre1g00712 775 MobiDBLite consensus disorder prediction 612 628 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 263 297 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 589 604 - -
Trre1g00712 775 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 173 IPR002130 GO:0000413|GO:0003755
Trre1g00712 775 MobiDBLite consensus disorder prediction 664 684 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 722 738 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 389 406 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 200 218 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 500 567 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 177 775 - -
Trre1g00712 775 SUPERFAMILY Cyclophilin-like 4 178 IPR029000 -
Trre1g00712 775 MobiDBLite consensus disorder prediction 305 326 - -
Trre1g00712 775 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 172 IPR002130 GO:0000413|GO:0003755
Trre1g00712 775 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 181 - -
Trre1g00712 775 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 173 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 407 431 - -
Trre1g00712 775 Gene3D - 1 182 IPR029000 -
Trre1g00712 775 MobiDBLite consensus disorder prediction 353 376 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 645 659 - -
Trre1g00712 775 MobiDBLite consensus disorder prediction 438 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00712 Trre-Chr1 5358992 5364921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00712 25 169 U-box Gene Family AT5G67530 39.189 2.30e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00712 K09566 - cave:132189182 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00712 1 5358992 5364921 Trre1g00712 1 5358992 5364921 ECH