Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00711 ATGGATTCTCCAGAACCTTCTAAGATCATCAACAACACTTCTTCTTCTTCTTCTCTCTCCACTCTCAATCCCGCCGCTGAATCTCCTCAAGTTCAAGAATCTCCCTTTTTGAGATTTGTCAACACTCTATCTCCAATAAAGCCCGTCAAGACTTCTCATACGACACATGGGTTTCTCGGACTCAATTCTCCACCTATTGTATTCAAGTCGCCGCGTATTAGTGACCACCACCGTGAAACACAATACTTGGAAAGGCCTCAAGGTACCCATTTGTCCAGTGGAGAAATATCTCAAACTGACATCCGAGACAACAGTCTCGGTGAAGCTCGTGGTGATTTGAAGAAATTGACTTCTCAGCAGTCATTGCCAGAGGGGTTTATAACAGATGCTCAGCAGGAATTTGGCATAAAAAATGATGCAAATAACCAAAGCTGCAGTCCTCCACAATCTGTTGAGGAATATTTGGCTGATCCCGGGGATGATCAATTGTTTCCAGTCAACCCAGAAACGGAACAATCCACCGATGCAGTTGGGTCATCCTTAACTGAGTCAGAGAGAGTTATATTAAAATTTGATAGGAGTGATGGTCCTAGTAATAGAGCAGAAGAACTTTTGCCTCTGTTAGAGGAATCTAATATGGTTCATCCAGAAAGGCTAGCATATGTTGAAAATCCTTCAATAGTAGAAGGGGAGAAAAATGGGGCTGAATTGGTTTCTCAAGAGCACATAAACGTAGGCTCGGGTTCAGGTGCAGATGCTTTTGATAAACAATATTGCCATGATTCACTTCCCCAGTGTGCAGCAACTGATCAACAGCATCATAGTGACTGTACACCTCAATTGATGCCTGATCCTATTCAAGGTATTAAAGAATTCGAAAATTCCAACGAGATGGTGTCAACCTCACAAGTAAATTCAGAGAATATCCCACAAGATGGCTCTGAGGCTAGTCTAAAGTATCATGGCTTCCGTAGACGCTGCCTACAATTTGATGAAGCTGCTTCCATTGTTCTTGGAAGTAACAAGTCTCATGTGAAAATGAATGCAACTTCAAGCAACATGAAAATGGTTCCTGTGGCAGGTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTGTAAATGCAATGCCACCTAGCCGCACTTCAACTTCAGTTGTGAGATTATCAGATGGTTTACAGGGGATACAATCCAAACCTTCTATAAGTCTGCATAAAGTGGAAAGTGTGACAAGATCCTCAGTTCCGTCCAATATGGATGGTCAATCGTTTATTGCTAGAAATGAGAACCATGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCCGAGTCTCATATCTTGGAAGAATCCATCGGCCTATATCCGGCAAATACACATGATAAGAAGAGAGTTAGCCCTGCCGAAGTTGAAAATATCGAGGAATCAAACCATCGTAGCACCTCCAAGAAAAAGAAGAAAATAAGTGCTGATGATGCCAGTGGACCTAAGAGTTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGCGATTGTTTTGGTGCTGGACTCTTCTGTGGCGACGATTGTGCTTGCGAAAGCTGTGGTAATAGAATAGAGTTTCAGGAGACAGTTGTTGAGACAAAGCATCATATCGAATCTCGTAATCCACAGGCATTTGCTCCCAAGATTGTACTGTGTGCGGCCGATGTTCCACCAAATAATATGGAAGATGTGAATATGACAACACCGGCATCGGCGAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGTACTAAAAAATATTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGAGTGGATGTCGATGTGATGGATGTATGAATGCTTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTCAAGCAAAGAGAGGGAGAGCAGCAGCATTGTTGAAGAAGGGTTGGATGACACACTTCACAATAAACAGAAAATGGTGACAATCAGGACAGGCTTGTTTCGACCAGCAAATCACCTCTCACCTGTAACACCATTGTTTGAATGCTCTGACCAAGGCACGCAGGCTGCAAAGTCCACAGTTGCTTCTGCAAGTTGGACTAAATCCTCCAAAAAATCGCGGAGCAGTCTTGCACATTCAGAGTCGAATAATTCTCAAAAGAATGCACCTACAGGTCCTTCATCTAAAGATAATGAGTGGTTAGATCTTCCACCATACCAACTCTCCAATAGATGTGGTATTCGCCAATTATCGGGGGGTTCTATTCGTTGGCGTGGTAGTTCACCAATTACCCCAAATGCTCCCAAAGATGATGAATCAGACGGCAAGCTATTTGACATTCTAGAAGATGAAACACCTGAAGTATTGAAGGAAGCTTCAACTCCCATCAAGTCTGTGAAAGCAAATTCGCCTATCCAAAAGAGAGTTTCTCCTCCACAGAATCATCTACTTCGGATTGGAACAAGCTCCTCAGGTGGTTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCTTTTCCGCCGTTGACCCCTTGTGCTGATTCAAAAGCTATTCGCACTGCAAATGAAGATTCGGGTAACAGCACAGATAAAGTAACATAA 2610 0.4249 MDSPEPSKIINNTSSSSSLSTLNPAAESPQVQESPFLRFVNTLSPIKPVKTSHTTHGFLGLNSPPIVFKSPRISDHHRETQYLERPQGTHLSSGEISQTDIRDNSLGEARGDLKKLTSQQSLPEGFITDAQQEFGIKNDANNQSCSPPQSVEEYLADPGDDQLFPVNPETEQSTDAVGSSLTESERVILKFDRSDGPSNRAEELLPLLEESNMVHPERLAYVENPSIVEGEKNGAELVSQEHINVGSGSGADAFDKQYCHDSLPQCAATDQQHHSDCTPQLMPDPIQGIKEFENSNEMVSTSQVNSENIPQDGSEASLKYHGFRRRCLQFDEAASIVLGSNKSHVKMNATSSNMKMVPVAGSKPPGIGLHLNSIVNAMPPSRTSTSVVRLSDGLQGIQSKPSISLHKVESVTRSSVPSNMDGQSFIARNENHETDASVVADSFISESHILEESIGLYPANTHDKKRVSPAEVENIEESNHRSTSKKKKKISADDASGPKSCNCKKSKCLKLYCDCFGAGLFCGDDCACESCGNRIEFQETVVETKHHIESRNPQAFAPKIVLCAADVPPNNMEDVNMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSSGCRCDGCMNAFGKREDFVAMEHASSKERESSSIVEEGLDDTLHNKQKMVTIRTGLFRPANHLSPVTPLFECSDQGTQAAKSTVASASWTKSSKKSRSSLAHSESNNSQKNAPTGPSSKDNEWLDLPPYQLSNRCGIRQLSGGSIRWRGSSPITPNAPKDDESDGKLFDILEDETPEVLKEASTPIKSVKANSPIQKRVSPPQNHLLRIGTSSSGGLKSGRKFILQSVPSFPPLTPCADSKAIRTANEDSGNSTDKVT 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00711 869 MobiDBLite consensus disorder prediction 460 500 - -
Trre1g00711 869 MobiDBLite consensus disorder prediction 694 737 - -
Trre1g00711 869 MobiDBLite consensus disorder prediction 754 776 - -
Trre1g00711 869 MobiDBLite consensus disorder prediction 846 869 - -
Trre1g00711 869 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g00711 869 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 587 622 IPR005172 -
Trre1g00711 869 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 499 534 IPR005172 -
Trre1g00711 869 MobiDBLite consensus disorder prediction 802 829 - -
Trre1g00711 869 SMART CXC_2 584 625 IPR033467 -
Trre1g00711 869 SMART CXC_2 496 537 IPR033467 -
Trre1g00711 869 ProSiteProfiles CRC domain profile. 497 624 IPR005172 -
Trre1g00711 869 MobiDBLite consensus disorder prediction 694 729 - -
Trre1g00711 869 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 852 IPR044522 GO:0003700
Trre1g00711 869 MobiDBLite consensus disorder prediction 464 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00711 Trre-Chr1 5351174 5356302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00711 309 847 CPP Transcription Factor Family AT3G22780 33.813 1.28e-57 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre1g00711 TCR 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00711 K21776 - gmx:547664 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00711 1 5351174 5356302 Trre1g00711 1 5351174 5356302 ECH
Trre1g00711 1 5351174 5356302 Trre5g04208 5 43751610 43752992 PCT