Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00705 ATGGTTAGGCAAGTACGTAACCTTTTTTGTAAAGCGAAAGAGTACATACACAGTCACACACGTACTCTTCGGAACCCTAACCCTAACAAACCTTCACTTCGTCCCCTTTCTCCAATTCCATCTTCTCGCAGGTATTCATTCATCTACTCTCTCGCTATTTCTGTGATAATGGGAGAAACAAAGGAAGAAGCATACGAGGAAGAGCTTCTTGATTACGAAGAGGAAGATGACAGAGCTCCTGATTCCGTTGGAACTAAAGTTAATGGTGAATCTGGGAAGAAGGGCTATGTCGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGTGCAACATGAGTGCATACCTCAAGCAATTCTTGGAATGGATGTATTATGCCAAGCAAAATCTGGAATGGGAAAAACTGCTGTTTTTGTTCTATCAACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCTCTTGTTCTGTGTCATACAAGGGAATTAGCATACCAGATATGCCATGAGTTTGAACGGTTCAGCACCTACTTGCCTGATCTCAAGGTTGCTGTCTTTTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGCTGAAAAACGAATGCCCTCACATTGTCGTTGGTACACCTGGAAGAATACTAGCATTAGCCAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGATATGAGGAAAGATGTGCAAGATATTTTCAAGATGACTCCCCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGACGACGAAGCAAAATTGACCCTTCATGGTCTTGTTCAGCACTACATCAAATTGAAGGAGGAGGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTCAATCAAGTTGTGATCTTTGTGAAAAGTGTCAGCAGAGCAGCTGAGCTGGACAAACTACTTGTGGAATGCAACTTTCCATCCATATGCATTCATTCTGGAATGTCCCAGGAAGAAAGGTTGAAGCGGTATAAAGGTTTTAAGGAGGGGCATACAAGGATTCTTGTAGCAACAGATTTAGTTGGCAGGGGAATTGACATTGAACGTGTGAATATAGTGATAAACTATGACATGCCTGACTCTGCAGACACATACTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCAAGCGATGTTGATGTTCTCAACAATGTTCAGTCCCGGTTTGAGGTGGATATAAAACAGCTTCCTGAGCAGATTGATACATCTACCTACATGCCATCATAA 1452 0.4236 MVRQVRNLFCKAKEYIHSHTRTLRNPNPNKPSLRPLSPIPSSRRYSFIYSLAISVIMGETKEEAYEEELLDYEEEDDRAPDSVGTKVNGESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00705 483 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 100 457 - -
Trre1g00705 483 Pfam Helicase conserved C-terminal domain 332 439 IPR001650 -
Trre1g00705 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 452 IPR027417 -
Trre1g00705 483 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 306 IPR014001 -
Trre1g00705 483 Pfam DEAD/DEAH box helicase 127 292 IPR011545 GO:0003676|GO:0005524
Trre1g00705 483 Gene3D - 315 482 IPR027417 -
Trre1g00705 483 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 479 IPR001650 -
Trre1g00705 483 SMART helicmild6 358 439 IPR001650 -
Trre1g00705 483 SMART ultradead3 121 322 IPR014001 -
Trre1g00705 483 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 102 130 IPR014014 GO:0003724
Trre1g00705 483 Gene3D - 98 314 IPR027417 -
Trre1g00705 483 CDD SF2_C_DEAD 319 448 - -
Trre1g00705 483 FunFam DEAD-box ATP-dependent RNA helicase 315 483 - -
Trre1g00705 483 CDD DEADc_DDX39 101 308 - -
Trre1g00705 483 FunFam DEAD-box ATP-dependent RNA helicase 56-like 90 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00705 Trre-Chr1 5309068 5316522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00705 57 483 Eukaryotic Initiation Factors Gene Family AT5G11200 83.156 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00705 K12812 - gmx:100808957 814.683