Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00700 ATGGTACAAAGTAACAAGTTTAGAGGAGTTAGACAACGTCAGTGGGGCTCTTGGGTCTCAGAAATTCGTCACCCTTTATTGAAGAGAAGGGTATGGCTAGGTACATTTGAGACAGCAGAGGCAGCAGCCAGAGCATATGACGAAGCAGCCATTTTAATGAATGGAAAAAATGCCAAAACTAATTTCCCTATACCAAAAGATATTCAAACGTTAACACAAGATTTTAATTCCATAACACCAAATTGTTATGATGATAATAATAACTCTTTCCTCTCTTCAAATTCTCTTTCTGATATTCTAAACAAAAAGCTTAGAAAATGTTGCAAAAAACAATCTCCATCACTCACTTGTTTCAGGCTTGATGCTGACAATTCTCATATAGGAGTTTGGCAAAAAGGAGCAGGATCACATTCTAATTCTAATTGGATCATAAGGGTTGAGCTTGGAAAGAAATTACATGAAGAGGGTCATGATGAATCAAATTATGTGACATCATTAGCAGAATCAGCGCCTCATAATAGTACTATTGATGATCATGCTGAGAAAAATGGGATAGATCATGAAGAGGATATTGTTACCATGCAGATGATCGAAGAACTACTTAATTGA 609 0.3612 MVQSNKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDEAAILMNGKNAKTNFPIPKDIQTLTQDFNSITPNCYDDNNNSFLSSNSLSDILNKKLRKCCKKQSPSLTCFRLDADNSHIGVWQKGAGSHSNSNWIIRVELGKKLHEEGHDESNYVTSLAESAPHNSTIDDHAEKNGIDHEEDIVTMQMIEELLN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00700 202 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Trre1g00700 202 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Trre1g00700 202 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Trre1g00700 202 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 154 - -
Trre1g00700 202 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Trre1g00700 202 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Trre1g00700 202 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Trre1g00700 202 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Trre1g00700 202 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Trre1g00700 202 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00700 Trre-Chr1 5297426 5298179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00700 1 202 AP2-EREBP Transcription Factor Family AT5G25390 54.902 1.81e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre1g00700 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00700 - - lang:109326202 228.794