Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00678 ATGAAAACTGACTTAACTTCTATAAGTATGGAGGATGCCCCAGCTGAAATGAGACCTAACAACATTGCTGAACCGGTTATCGATTCTTTTGATTTTGCTGAAAACTTCGCTACTGATAAGACATTTAGTACTCGAGATGACTTGTTGAAATGGGTTCGTGGTGAAGCAGTCAAGTTAGGGTTTACTATTATTATTTCAAAATCAGATAATGGATCAGATAAAAGAAAACAAACACTTGTACTTGGTTGTGAAAGGGGTGGTGTATATAGAGAAAACAAGAAGAAATTGAAAGGCCAAGACACAAGATCCATAAAATGTGAGTGTCCTTTCAGATTGCGGGGTTATTTTTTGAGCTCTGGTGTTTGGAAAATTACTGTAGTGTGTGGAAAACACAATCATGAGACGACAAAAGATTTAGAAGGTCATCTTATTCCACGTCGTCTAAATATGGAAGACAGAAAACTTGTTGAGGAGATGACAAGTAACATGGTCCAACCAAAAAATATTCTTATGACTTTAAAAAAAAGAAGCTATGACAATGTGGCTAATATCAAACATATTTATAATGCGCGTCACAGATACAAAAAGGGAGAAATGCAACACATGATGGATCTTTTGGTTGAAGGCGGTAATGTCCCAAATGAAGGTCATCCAGATATATCGATTACAGAAGAGTTGGAAGCGATCCAGGTTCGGTTTAACAATGCTGATTACATTACGAAGATGCAAATAAAGGAGCAGCTGCGTCAAATAGCATTTCCAGAAACAACACCACCGTGTCCACCTGGTTTTAATGGAAAACAAAATATGTAA 813 0.369 MKTDLTSISMEDAPAEMRPNNIAEPVIDSFDFAENFATDKTFSTRDDLLKWVRGEAVKLGFTIIISKSDNGSDKRKQTLVLGCERGGVYRENKKKLKGQDTRSIKCECPFRLRGYFLSSGVWKITVVCGKHNHETTKDLEGHLIPRRLNMEDRKLVEEMTSNMVQPKNILMTLKKRSYDNVANIKHIYNARHRYKKGEMQHMMDLLVEGGNVPNEGHPDISITEELEAIQVRFNNADYITKMQIKEQLRQIAFPETTPPCPPGFNGKQNM 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00678 270 Pfam FAR1 DNA-binding domain 56 135 IPR004330 -
Trre1g00678 270 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 78 201 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00678 Trre-Chr1 5120892 5121983 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre1g00678 FAR1 5.6e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00678 - - psat:127096711 324.709