Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00673 ATGGGAAAACCAGCTGGAAAAAAGAAGGAACATCATGAATCACCAAAAACAAAGAACAACAACAAAGGTGGTGGTTACGAACGTTCATCATCATCAAAAGCATTAGACGATGATACTGCGATGTTTATCAACATGTCACAAGAGTTAAGAGAAGAAGGTAACAAACTTTTTTACCAGAAAAAAGACAATGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTTAAACTTCTTCCTAAAAATCATATAGATGTTGCACATCTTCATACAAATATGGCTATGTGTTATATGCAATTGGGTCTTGGTGAGTACCCTAGAGCAATCAATGAGTGCAATCTTGCTTTGCAGGTTTCGCCGAGGTATAGTAAAGCTCTTTTAAAGAGAGCTAAGTGTTATGAATCGTTGAATCGGTTAGATTTGGCTATGAGAGATGTTAGGGTTGTTTTGAATGCTGAACCGAATAATTTGACCGCGTTGGAGATTCTTGATAGTTTGAGGAATACTATGGATGAGAAAGGGATTACCATCGATGAGACTGAGATTGCTTTGGCTGCTTTGCAGCAGGTTGAGCCGCCTGCTGCAAGGTTTAGGAAAGTTGTTAGGGAGAAGATTACTAAGAAGAAGAAAGGACATAAAGGGGAAGGTGATGAAGAGCGGAAAAATAAGAATGTTGTTGTTGAGAAGAATAACAATGTTGTGAATGTTAAGGTGAAGGGTAAAGATTCTAAGGATAAGGATAAGGATAGTAGAGATGTTGTTACGAAAGATAAAGCGGTTACTAGGACTGTGAAGTTGATTTACGGTGAGGATATTAGGTGGGCGCAGTTGCCTGTGAATTGTAGTATGAAGTTGGTGAGGGATGTGATAAGGGATAAGTATCCGGGTTTAAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAGGGTGATTTGGTTACTATTACTACTACTGCTGAGTTGAGGTTAGCTGAGGGTTGTCACGTGCTTGGTTCGATTCGGTTGTATATTACGCAGGTGGATTTGGATAAGGAGCCACGTTATGATGAAAAGCCAAGTAGTGGTGAGGTGAGAAGGGAGAATGGGGTTGGAGAAGGAGACAGGAGTAATAAGATGCTTACTGTGGAGGATTGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTCGGGTTTGATTCTGATTCGTATCTGGATATTCATGAGGTTGGGATGAAGCTATATTCGGAAGCGATGGAGGATGCGGTGACGAGTGATGGTGCTCAAGAGCTGTTTGATATTGCTGCGGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCACTTGTCTAAGGCGAGGAGGCAAGTGCCTTGTCAGGAGGAAGGGTCGAGAGATGCTTCTTTCGAGCATGTTAAAGCTGCGTATGAGTGGGCTAAGAAGGAGTACAAGGAAGCGGAAATGAGATACGAAGAATCTGTGAAAATCAAACCAGACTTTTATGAGGGACTCCTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTATGCTGGTGTTATTTAATTGCAAATAATAAGGAATTCGAAGTTGGCCCTTTTGAGGAGGTTCTACAGCTCTATAACAAGGCAGAGGACGGCATGGAGAAAGGGATGTTGATGTGGGAGGAGCTTGAGGAACAGCGCTTGAATGGACTATCTAAATTAGATAAATATAATGCACAGTTAGAGAAAATGGGTTTGCACGGTCTTTTCAGGGATGTTTCTTCCGAGGAAGCTGAAGAGCAGACTTCAAAGATGAGGATACAGATATATCTTTTGTGGGGTACCTTATTGTACGAGCGTTCTGTTGTGGAGTTTAAGCTAGGACTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACAAGCTGGAGCTTCAACAACTGACATTGGTGTTATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATTGATGACATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCAACTTTCCGACTTGAACCATTGTTTCGTCGGCGTGTTCCAAGACTCCATTACATCTTGGAGCAATTTTAA 2112 0.4157 MGKPAGKKKEHHESPKTKNNNKGGGYERSSSSKALDDDTAMFINMSQELREEGNKLFYQKKDNEGAMLKYEKALKLLPKNHIDVAHLHTNMAMCYMQLGLGEYPRAINECNLALQVSPRYSKALLKRAKCYESLNRLDLAMRDVRVVLNAEPNNLTALEILDSLRNTMDEKGITIDETEIALAALQQVEPPAARFRKVVREKITKKKKGHKGEGDEERKNKNVVVEKNNNVVNVKVKGKDSKDKDKDSRDVVTKDKAVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIRDKYPGLKGVLVKYKDREGDLVTITTTAELRLAEGCHVLGSIRLYITQVDLDKEPRYDEKPSSGEVRRENGVGEGDRSNKMLTVEDWLVQFARLFKNHVGFDSDSYLDIHEVGMKLYSEAMEDAVTSDGAQELFDIAADKFQEMAALALFNWGNVHLSKARRQVPCQEEGSRDASFEHVKAAYEWAKKEYKEAEMRYEESVKIKPDFYEGLLALGYQQFEQAKLCWCYLIANNKEFEVGPFEEVLQLYNKAEDGMEKGMLMWEELEEQRLNGLSKLDKYNAQLEKMGLHGLFRDVSSEEAEEQTSKMRIQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFEQAGASTTDIGVMIKNHCSNETAMEGFKIDDIVQAWNEMYDGWQFDVPTFRLEPLFRRRVPRLHYILEQF 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00673 703 PANTHER PROTEIN CLMP1 1 701 IPR044517 -
Trre1g00673 703 MobiDBLite consensus disorder prediction 208 223 - -
Trre1g00673 703 CDD PB1 261 334 - -
Trre1g00673 703 MobiDBLite consensus disorder prediction 203 223 - -
Trre1g00673 703 Pfam PB1 domain 259 335 IPR000270 GO:0005515
Trre1g00673 703 MobiDBLite consensus disorder prediction 343 363 - -
Trre1g00673 703 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g00673 703 SUPERFAMILY TPR-like 45 163 IPR011990 GO:0005515
Trre1g00673 703 MobiDBLite consensus disorder prediction 1 18 - -
Trre1g00673 703 Gene3D Tetratricopeptide repeat domain 44 172 IPR011990 GO:0005515
Trre1g00673 703 SMART tpr_5 121 154 IPR019734 GO:0005515
Trre1g00673 703 SMART tpr_5 85 120 IPR019734 GO:0005515
Trre1g00673 703 SMART tpr_5 46 80 IPR019734 GO:0005515
Trre1g00673 703 SMART tpr_5 462 495 IPR019734 GO:0005515
Trre1g00673 703 SMART PB1_new 259 337 IPR000270 GO:0005515
Trre1g00673 703 SUPERFAMILY CAD & PB1 domains 258 342 - -
Trre1g00673 703 Gene3D - 252 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00673 Trre-Chr1 5063128 5065341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00673 36 154 Calmodulin-binding Proteins AT3G25230 31.250 8.86e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00673 K26538 - zju:107421160 889.797