Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00660 ATGAAAATGAAGTTTCTTCACATGATTCTCATGATGTTTATCCTTATTCTTCACAAACCCATTTGGATTCTTGCTTCTATAGTAGACCCTCTTGTTCCCTCACCTCAAATTTCACCTTTTTCTCCAATTCTCACATCAATCACGGTGTCTGCTTCCTCTCCAGGTATTCATGTGGGGGATGAAAACAATAAAATGGATTCACACAAGAAAAAGATAATGGCTTTGATTGTAGCTAGCACTGCACTTGGTGCCATCATTTTGTGTATGTTAAGTTTCTGGATTTATCACATCAAGTATTCTTCAAAACCCAACAAAAAAAAGTTTCAAACCTCAGATGGTGAGAAAGGGCTTGGTTTAGCTCCATTTTTGAGTAAATTTAGTTCTGTGAAAATGGTTGGTAAGAAAGGTTGTGTTCCAATCATTGACTATAAGCAAATAGAAAAAGCCACTGGAAATTTCAAGGAAAGTAACATCTTAGGTGAAGGTGGTTTTGGATGTGTTTACAAGGCTAGGTTGGATGATAATTTAGATGTTGCTATCAAGAGGTTGAATTGTGAATGTCAATATGCAGAAAGAGAATTTGAGAATGAGGTGGAATTGCTAAGTAAAATTCAACATCCAAATGTAATTTCTCTGCTTGGTTGTAGCAGTAATGAGGATTCAAGGTTTATTGTCTATGAATTGATGCAAAATGGATCATTGGAAACTCAATTACATGGACCATCTCATGGCTCAGCATTGACTTGGCATATGAGGATGAAAATTGCTCTTGACACAGCAAGAGCTTTAAAGTATCTGCATGAGCACTGTTACCCTTCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGGTTTCTGATTTTGGTCTTGCAATAACTGATGGGTCCCAAAACAAGAATAACATCAAGCTTTCAGGCACATTGGGGTACGTTGCCCCAGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTATATGCTTTTGGAGTTGTGCTTCTTGAGCTGCTATTAGGAAGGAAGCCTGTGGAAAAACTGAACCCATCTCAATGCCAATCTATTGTCACATGGGCCATGCCGCAGCTCACAGATAGATCAAAGCTTCCAAACATTGTGGATAATGTGATTAAGAATACAATGGATCCTAAGCACTTATTCCAGGTTGCTGCTGTGGCAGTATTATGTGTGCAACCAGAGCCATGTTATCGCCCTCTGATTGCAGATGTTTTACACTCCCTCATCCCTCTTGTACCTGTTGAGCTAGGAGGAACTCTCAGAGTTTCACATGTGACGCAGCAACCTGAGAATTCTAGTTAA 1347 0.3853 MKMKFLHMILMMFILILHKPIWILASIVDPLVPSPQISPFSPILTSITVSASSPGIHVGDENNKMDSHKKKIMALIVASTALGAIILCMLSFWIYHIKYSSKPNKKKFQTSDGEKGLGLAPFLSKFSSVKMVGKKGCVPIIDYKQIEKATGNFKESNILGEGGFGCVYKARLDDNLDVAIKRLNCECQYAEREFENEVELLSKIQHPNVISLLGCSSNEDSRFIVYELMQNGSLETQLHGPSHGSALTWHMRMKIALDTARALKYLHEHCYPSVIHRDLKSSNILLDANFNAKVSDFGLAITDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLNPSQCQSIVTWAMPQLTDRSKLPNIVDNVIKNTMDPKHLFQVAAVAVLCVQPEPCYRPLIADVLHSLIPLVPVELGGTLRVSHVTQQPENSS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00660 448 SMART serkin_6 153 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00660 448 Gene3D Transferase(Phosphotransferase) domain 1 229 428 - -
Trre1g00660 448 Pfam Protein tyrosine and serine/threonine kinase 156 391 IPR001245 GO:0004672|GO:0006468
Trre1g00660 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Trre1g00660 448 ProSiteProfiles Protein kinase domain profile. 153 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00660 448 FunFam Protein kinase superfamily protein 120 228 - -
Trre1g00660 448 ProSitePatterns Protein kinases ATP-binding region signature. 159 181 IPR017441 GO:0005524
Trre1g00660 448 CDD STKc_IRAK 159 426 - -
Trre1g00660 448 Gene3D Phosphorylase Kinase; domain 1 122 228 - -
Trre1g00660 448 SUPERFAMILY Protein kinase-like (PK-like) 134 423 IPR011009 -
Trre1g00660 448 PANTHER OS01G0750732 PROTEIN 55 427 - -
Trre1g00660 448 FunFam probable receptor-like protein kinase At1g80640 229 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00660 Trre-Chr1 4975994 4979918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00660 66 427 Receptor kinase-like Gene Family AT3G58690 44.652 3.77e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Trre1g00660 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00660 - - gmx:100812044 714.531