Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00658 ATGAAAGTTATAAAACGAGCAATTAGGGTTTTTCAACGCCGTTTGGCAACCCTTTCATTTCCAAACGCGGTCGAAGAAGCAGCAGCTGCCAAAATGCCTTCACACAAGACATTTGTAATCAAGAAGAAGCTCGCGAAGAAGATGAGACAGAACAGACCCATCCCTTATTGGATTCGCATGAGAACGGACAACACGATCCGTTATAATGCTAAGCGTCGTCACTGGCGTCGTACCAAGCTTGGATTCTGA 249 0.4538 MKVIKRAIRVFQRRLATLSFPNAVEEAAAAKMPSHKTFVIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00658 82 FunFam 60S ribosomal protein-like L39 32 82 - -
Trre1g00658 82 SUPERFAMILY Ribosomal protein L39e 34 81 IPR023626 -
Trre1g00658 82 Hamap 50S ribosomal protein L39e [rpl39e]. 32 82 IPR000077 GO:0003735|GO:0005840|GO:0006412
Trre1g00658 82 Pfam Ribosomal L39 protein 40 80 IPR000077 GO:0003735|GO:0005840|GO:0006412
Trre1g00658 82 ProSitePatterns Ribosomal protein L39e signature. 61 77 IPR020083 GO:0003735|GO:0005840|GO:0006412
Trre1g00658 82 Gene3D Ribosomal protein L39e 32 82 IPR023626 -
Trre1g00658 82 PANTHER RIBOSOMAL PROTEIN L39E 24 82 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00658 32 82 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.196 9.63e-31 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00658 K02924 - sspl:121807082 113.62