Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00654 ATGGAAAGACAAAGCAAAGAAAGTACTTCTCTAAGTCCAAGCACACCATTACAAAATCAACATGAAAAGAAGAAACAACAATCTATTGATCATGAAGAAGAGGAGATCACAAAGGTAGATACTTTATTATTTGATCTAAATGAATCTACCACCAATGAAGATTCTATGCTTGTTTGTAATAATCAACAAGAAATAGAACTCAATCTTATAACTTCTTTAGATGTTGGTAATTCATCATTAGAAAACAAAAACACTCTTGAGGTAGAACAAAGAGTTTTCTCTTGTAATTATTGTCATAGAAAATTCTATAGTTCACAAGCATTAGGAGGACACCAAAATGCTCACAAAAGAGAGAGATCAATAGCAAAAAGAGGACAAAGATTTGGAACACAAATAATAACTTCATCTTCTTCTTTTGGTTTTGGTTTTCCTATTATGCATAATAAACAAACCTATGCAAACATGGCTTCTTTGCCTCTTTATGGTGCTTTTGGTAATAAACCTTTTGGAATTCAAGCACACTCTATGATACATAAACCTTCTAATGGATTTGGAAACTCTTATGGACATCATCATCATCATGGTTGGTCAAACTCAAGAACATTTATGGATCAACAACCTGGAATAGCGAAACTAGGCGCGGAAAATTTTCATCGAGCGACAACATCAGCGGCAGCATTATCATCATCAAGAGGAAGTGTTGGTAGATTTGAAGTGGTGGATGCAATGATGAATTCTGCAGCTAATAAAGAAATGAAGCAAAAACATCTTGATTTATCCCTCAAGCTATGA 792 0.3384 MERQSKESTSLSPSTPLQNQHEKKKQQSIDHEEEEITKVDTLLFDLNESTTNEDSMLVCNNQQEIELNLITSLDVGNSSLENKNTLEVEQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGQRFGTQIITSSSSFGFGFPIMHNKQTYANMASLPLYGAFGNKPFGIQAHSMIHKPSNGFGNSYGHHHHHGWSNSRTFMDQQPGIAKLGAENFHRATTSAAALSSSRGSVGRFEVVDAMMNSAANKEMKQKHLDLSLKL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00654 263 Gene3D Classic Zinc Finger 71 139 - -
Trre1g00654 263 SUPERFAMILY beta-beta-alpha zinc fingers 89 120 IPR036236 -
Trre1g00654 263 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 263 IPR044246 GO:0009788
Trre1g00654 263 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g00654 263 MobiDBLite consensus disorder prediction 7 22 - -
Trre1g00654 263 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Trre1g00654 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00654 Trre-Chr1 4925627 4926418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00654 3 263 C2H2 Transcription Factor Family AT5G10970 37.667 1.13e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00654 - - lja:Lj5g3v0526470.1 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00654 1 4925627 4926418 Trre5g05127 5 52587288 52588073 PCT