Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00651 ATGAATGATCTTAGAGATAAGTTTCCAATTGGAATGCGTGTTCTTGCTATTGATGATGATAGAACATGTCTCAAGATTTTGGAAAAACTTCTCCTCAAGTGTCAATACCATGTAACCACTGCTCAAAACGCGATAACCGCGCTGAACTTGTTGCGAGAAAACAAAAACAATTATGACTTGGTGATAAGCAATGTTCATATGCCTGATATGGATGGATTCAAGCTGCTTGAGCTTATTGAACTTGAGATGGACTTACCTGTCATAATGTTTTCGGCTAATGATGATCCGAAGATGGTGCGCAAAGGAATTAGTCATGGTGCTTGTGATTATCTGCTGAAACCTGTTACACTGACAGAGACCCCTTCCATACACCGCAAGTTTGTTGCTGCTGTTGATCAATTAGGAGGAATTGAGAATCCAGAGGCTGTGCCGGTAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGCATGTGTCTAGCCATCTTCAGAAATATAGACTCTATATGAAAAGAACTGGTGACTGGGAAAACCAATAG 546 0.4011 MNDLRDKFPIGMRVLAIDDDRTCLKILEKLLLKCQYHVTTAQNAITALNLLRENKNNYDLVISNVHMPDMDGFKLLELIELEMDLPVIMFSANDDPKMVRKGISHGACDYLLKPVTLTETPSIHRKFVAAVDQLGGIENPEAVPVKILDLMNVEKLTREHVSSHLQKYRLYMKRTGDWENQ 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00651 181 FunFam Two-component response regulator 112 176 - -
Trre1g00651 181 SUPERFAMILY CheY-like 11 119 IPR011006 -
Trre1g00651 181 SMART REC_2 12 131 IPR001789 GO:0000160
Trre1g00651 181 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 170 IPR006447 GO:0003677
Trre1g00651 181 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Trre1g00651 181 SUPERFAMILY Homeodomain-like 120 174 IPR009057 -
Trre1g00651 181 Gene3D - 2 123 - -
Trre1g00651 181 CDD REC_typeB_ARR-like 14 119 - -
Trre1g00651 181 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 163 IPR045279 GO:0009736
Trre1g00651 181 Gene3D - 124 173 - -
Trre1g00651 181 Pfam Response regulator receiver domain 14 119 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00651 Trre-Chr1 4901595 4903652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00651 120 181 Response Regulator Gene Family AT2G25180 64.516 6.35e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g00651 Response_reg 2.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00651 - K14491 mtr:25481957 257.299