Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00650 ATGAATGATCTTAGAGATACGTTTCCTATCGGAATGCGTGTTCTTGCTGTTGATGATGATAGAACATGTCTCAAGATTTTGGAAAAACTTCTTCTCAAGTGTCAATACCATGTAACCACTGCTCAAAATGCGATAACTGCGCTGAACTTGTTGAGAGAAAACAAAAACAATTATGACTTGGTGATTAGCAATGTTCATATGCCTGATATGGATGGATTCAAGCTGCTTGAGCTTATTGGACTTGAGATGGACTTACCTGTCATAATGTTTTCGGCAAATGATGATCCGAAGATGGTGCTTAAAGGAATTACTCATGGTGCTTGTGATTATCTGCTGAAACCTGTTATACTGAAAGAGGTACAAACCATTTGGCAGCATGTAATCAGGAAGAAGAGGACTACCAGAAGAAGCAACCACGACGCACCAAATTCTGATAGCGGAAATGGAATTGATTCTGCAGTGACAGGAAATTCTGATCAAAATGAAAGGCCTTCTAGAAAAAGGAAAGAAAAGAATGAAGATGATGCTGATGAGGAGAATGAGGATGATCATGACAATGATGATCCAACTGCGCAAAAGAAGGCTCGAGTTGTTTGGACCCCTGCCTTACACCGCAAGTTTGTTACTGCTGTTAATCAATTAGGCATCGACAAGGCTGTGCCGAAAAAGATTCTTGACTTGATGAATGATGAAAAGCTTACAAGGGAGAATGTGGCTAGCCATCTTCAGAAATATAGACTCTATCTGAAAAGAATTAGTGAAGGGGAAAACCAACAAGCTAATATGGCAGCATTGTTAGGTAGTTCTTCGGATACATCCTATTCAATGATGACTTCTCTCAGTGGCTCTTCACAGTTTCATAACAATCCTTTCAAATTCTTTGCATCTGGTGGTAGTACGAATAGTAATGTGAATCTGGGATTCAACACTCCTACTAATGTGAATATGCATGGATTCTCTTCTGGAACTCCTCAGCTGAATCACACACATAGCTTCAACAACTCAACACATGATCAGCTAAAGTTCCAATCGGCCATAACTCGCGACAATCTGAATGATGTTCAAAAAATGCCGATTTCTTCTGCAGAGCTAGATCAATTGCTACACAGTAAAGGTATTACTGTTAGTCCTAATATTCAAAGCATGACCAATAATCTTCCAGGTTATTATAAATCAAAAGTAACAATGAGTTACACAAACAATGCCTTGATTTTAGACTCGAATCCTCAAGAGAAACAAGTAACTGAAGGATACAAAAATTTAGCCTCTCAGAATTCGCAGTTTCTTCCTGTACTTGAAAACAGAAGGTGCAACGGTATTAGGTCGAACACTATGCAATTACCTGGAACAAACTCTTATTTGCCAAGAGAAGGTTTCGGCTATGCTTCTGCGTCTCATAAGGATAACCGAAATGCTGCTATGCTTCATACAGAAGCACATGAATTCTTCAATAATGTGCCATTTCAAGGTTGGGATAATAATCATGATGGAAGTTACCATTCTTCTCATGTGGTTGAAAGTTCAATAGGCTCAATGATTCCTGCTGTGAATGGTGTTGAACCAGAAGAAAACTTGGACTATAGTTATTGTGATCCGGTACAAATGAAGCGTGATCGTACCGTGGAGCTAACCGAAGGGCCGTCATTCAAACCACAACAGGCATATATGATGAACAACCAGATGAAGTTTCAAAACAGTGGAATCTCTAGTTATCATGGTTCAATCGAAGACGCTGTCCATGACATGATCAAGCAGAAACAATTGTATGCCAATTACTCTGGTAGCACAATGTGA 1794 0.3935 MNDLRDTFPIGMRVLAVDDDRTCLKILEKLLLKCQYHVTTAQNAITALNLLRENKNNYDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVLKGITHGACDYLLKPVILKEVQTIWQHVIRKKRTTRRSNHDAPNSDSGNGIDSAVTGNSDQNERPSRKRKEKNEDDADEENEDDHDNDDPTAQKKARVVWTPALHRKFVTAVNQLGIDKAVPKKILDLMNDEKLTRENVASHLQKYRLYLKRISEGENQQANMAALLGSSSDTSYSMMTSLSGSSQFHNNPFKFFASGGSTNSNVNLGFNTPTNVNMHGFSSGTPQLNHTHSFNNSTHDQLKFQSAITRDNLNDVQKMPISSAELDQLLHSKGITVSPNIQSMTNNLPGYYKSKVTMSYTNNALILDSNPQEKQVTEGYKNLASQNSQFLPVLENRRCNGIRSNTMQLPGTNSYLPREGFGYASASHKDNRNAAMLHTEAHEFFNNVPFQGWDNNHDGSYHSSHVVESSIGSMIPAVNGVEPEENLDYSYCDPVQMKRDRTVELTEGPSFKPQQAYMMNNQMKFQNSGISSYHGSIEDAVHDMIKQKQLYANYSGSTM 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00650 597 SUPERFAMILY Homeodomain-like 192 251 IPR009057 -
Trre1g00650 597 MobiDBLite consensus disorder prediction 140 160 - -
Trre1g00650 597 Gene3D - 11 144 - -
Trre1g00650 597 SMART REC_2 12 124 IPR001789 GO:0000160
Trre1g00650 597 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 323 IPR045279 GO:0009736
Trre1g00650 597 MobiDBLite consensus disorder prediction 131 192 - -
Trre1g00650 597 Pfam Response regulator receiver domain 14 120 IPR001789 GO:0000160
Trre1g00650 597 Pfam Myb-like DNA-binding domain 196 246 IPR001005 -
Trre1g00650 597 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 250 IPR017930 -
Trre1g00650 597 NCBIfam myb-like DNA-binding domain, SHAQKYF class 194 247 IPR006447 GO:0003677
Trre1g00650 597 PIRSF RR_ARR_type-B 1 596 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre1g00650 597 CDD REC_typeB_ARR-like 14 128 - -
Trre1g00650 597 FunFam Two-component response regulator 190 253 - -
Trre1g00650 597 Gene3D - 190 253 - -
Trre1g00650 597 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Trre1g00650 597 SUPERFAMILY CheY-like 11 136 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00650 Trre-Chr1 4892359 4895370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00650 6 410 Response Regulator Gene Family AT2G25180 49.296 5.78e-109 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre1g00650 Response_reg 6.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00650 - K14491 tpra:123915626 971.459