Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00648 ATGAGTAGCTTGGTTGAGAGGCTTCGCGTAAAACCTGATCGCACGCGTTTTAATACTATAGACGAGTCAGATGATGAAGCTGATTTAATGCCTGGAAAAAAACCAAGAACTCAAGAAAAGTTTGAGAGGATAGTTAGAAGTGACACAAAAGAGAATTCATGCCAAGCATGTGGAAAGAGTGGAAATCTTGTGAGCTGTGAAACATGCACTTATTCTTTCCACGCCGGTTGTTTACCTGCGCCACTTAAAAGGCTCCGTCTGAACAACTTGATGTGCCATGAATGTGTTAGTCCACTTAATGATATTGATAAGATATTAGATTACGAGACGCGTCCTGATGTAGCTGGCGAAACTGATGCCAAAGATTTGGTGTCGAAACAAAGTTCTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCTTATATGCATTGCAAATGGGTGCTAGAGGAAGAGTTTCTGAAGGCCTTCAAGTATAATCCCGGTTTAAAGACGAAAGTAAACAACTTTCATCGTCAATTGACAACAGATAAAAAATTGGGTGAAGATTTTGTTGCTATTCGACCTGAATGGACCATGGTTGATCGAATAATTGCTTGCAGGGGCGATGGTGATGAGAGGGAATATCTGGTGAAGTGGAAAGAGCTTCCTTATGATGAAAGCACTTGGGAACTCGAGTCGGATATCTCCACGTTTCAAGCAGAAATAGAGAGATTCAATTTATTTCAGTCCAGGTCTAGAAAATTTTCTTATGACAAGCAAAAACGCAGTGTTAACAATGATGCTGGATTGACAAAGCAGCAGAAAGAATTTCAACAGTATGAACGTAGCCCCGAGTTTCTTTCAGGGGGTACACTACATCCGTATCAACTTGAAGGATTGAACTTTCTACGATTTTCTTGGTCCAATCAAACTCATGTTATACTTGCCGATGAAATGGGACTAGGAAAAACCATACAAACTATTGCTTTCTTAGCATCTCTTTTCAAAGATATTGTTTTTCCACATCTGGTGGTTGCTCCACTTTCTACACTACGAAACTGGGAGCGCGAATTTGCAACTTGGGCACCTGAAATGAATGTTATCATGTATGTTGGATCTTCCAAAGCTCGTAGCATTATTAGAGAACATGAATTTTATTTTCCGGAGAAGAACAAGAAAAACAAAAGCATCAAGTTTGACGTCCTTTTGACATCGTATGAGATGATAAACCTTGACACTGCAGCATTGAATCATATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCGAAATTGTTTTCTTCATTGAAGCAATTCTCTAGCAGACATCGCGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAGCTCTTTATACTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAACAACAGATTTTGAGGCTTCATAAACTGTTGGCTCCGCATCTCCTGCGAAGAGTTAAGAAAGATGTCCTGACTAAACTACCTCCTAAAAAGGAGCTTATTATACGCGTTGACTTGAGCAGCAAGCAGAGAGAATATTATAAGGCAATTTTGACGCGTAATTATAATGTATTAACCGGCCCTGGTGGAGCACAAAATTCTCTTAACAATGTTGTTATGGAACTGCGTAAGCTATGTTGTCATCCGTACATGTTGAAAGGAGTTGGACCAGTTCCGGTTGAAGAAAAAGAAGCATATAAACAACTGCTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGCTGTTGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTTATATATTCCCAATTTCAGCGAATGCTGGACATGCTTGAAGATTATTGTGGTCACAAGCATTGGCAGTTTGAAAGGATAGATGGCAAGGTTCCTGGAGCTGAAAGACAAGTACGGATAGATCGATTTAATGCGAAAAATTCTTCAAAATTTTGTTTTCTTCTTTCTACTAGAGCTGCTGGAGTAGGGATAAACCTCGCAACGGCTGACACAGTTATTTTATATGACAGTGATTGGAATCCTCATGCTGATCTGCAAGCGATGGCAAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACACGAGGAACAATCGAAGAAAGGATGATTGAAATAGCAAAGAAGAAAATGGTTTTAGAACACTTAGTTGTAGGTGGTATGAAGGGTGAAAATATTAACCAGGATGAGTTGGACGATATCATAAGGTACGGCTCAAAGGAGTTGTTTGCTGATGAGAATATTGCAGAGGGAAAATCTCGTCAAATTCATTACGACGATGCTGCTATAGACAGATTATTGGATCGCGATCAAGTTGGAGATGACGAGGCCACTTTGGATGATGAAGATGAAAATGGACTTCTGAAAGCTTTTAAGGTGGCTAATTTTGGATACATCGATAAAGCCGAGTCTGCAGAAGAAATAGAGAATAATTTTTCAGTGAGCAGTTCAGGACGGCAAAACTACTGGAAGGAACTGCTTAAAGGCAGATATCAGAAGAGCGCAGTTGAAGAGCTCGATGCATTAGGTAAAGGAAAGCGGAGCCGAACAAAATTGCTGATGGTTTCTTTTAAGGTGAGTGGTTTCGTTGATTTAGGTGATGTAAGTTCCGACGACGAAGATGAAAATTACGAAACTGCGAAAAGTCATTCAAAAAAGAAAGCTCATAGTAATATTGCAGACAACACAAATTCACTTCCATTAATGGAAGGTGAAGGAAATTCACTCAAAGTGCTTGGTTTTACTCAAAGTCAGAGGAACACTTTCTTTCAAATTTTAATGAGGTTTGGGGTTGGTGATTTTAATTGGACGGAGTTTGCTCCGCGCATAAAGCAGAAGACTTGGCACGAAATCAATGCGTATGGAAACCTTTTCTTGTCTCATATTGCTGAAGATATAAATGATTCCCCGACATTCTCAGATGGTGTTCCGAAAGAAGGACTTCAAATACAAAATGTACTTGTTAGAATTGCAGTTCTGCTATCGATAAGGGAAAAAGTGAAGTTTGCATCAGAAAATCCCGGCACTCCACTTTTTTCAGACGACATATTGTCACGCTATTCAGACTTGGTAAGAAAGGCATGGAAGGAGGAGCATGATTTAGTCTTACTGCGCGCAGTTTTGAAGCATGGATATGGAAAGTGGGCAGCTATTTTTGATGATAAGGATTTGAATATTCAGACGATCATCTCCCACGAGTTAAACTGCGACAATGTCATGGAGAGAAGAGTACAAATTGATTTTATAAAAAAGAGATTTCTCCTTTTGGAGAAATGCCTCAACGATGAGAGCGCGAATGAATACACTGATGATATTTCGGCAAAGGAAGGAATAAACGAATAA 3417 0.3968 MSSLVERLRVKPDRTRFNTIDESDDEADLMPGKKPRTQEKFERIVRSDTKENSCQACGKSGNLVSCETCTYSFHAGCLPAPLKRLRLNNLMCHECVSPLNDIDKILDYETRPDVAGETDAKDLVSKQSSVKQYLVKWKGLSYMHCKWVLEEEFLKAFKYNPGLKTKVNNFHRQLTTDKKLGEDFVAIRPEWTMVDRIIACRGDGDEREYLVKWKELPYDESTWELESDISTFQAEIERFNLFQSRSRKFSYDKQKRSVNNDAGLTKQQKEFQQYERSPEFLSGGTLHPYQLEGLNFLRFSWSNQTHVILADEMGLGKTIQTIAFLASLFKDIVFPHLVVAPLSTLRNWEREFATWAPEMNVIMYVGSSKARSIIREHEFYFPEKNKKNKSIKFDVLLTSYEMINLDTAALNHIKWECMIVDEGHRLKNKDSKLFSSLKQFSSRHRVLLTGTPLQNNLDELFILMHFLDAGKFGSLEEFQEEFKDINQEQQILRLHKLLAPHLLRRVKKDVLTKLPPKKELIIRVDLSSKQREYYKAILTRNYNVLTGPGGAQNSLNNVVMELRKLCCHPYMLKGVGPVPVEEKEAYKQLLESSGKLQLLDKLLVKLKEQGHRVLIYSQFQRMLDMLEDYCGHKHWQFERIDGKVPGAERQVRIDRFNAKNSSKFCFLLSTRAAGVGINLATADTVILYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMIEIAKKKMVLEHLVVGGMKGENINQDELDDIIRYGSKELFADENIAEGKSRQIHYDDAAIDRLLDRDQVGDDEATLDDEDENGLLKAFKVANFGYIDKAESAEEIENNFSVSSSGRQNYWKELLKGRYQKSAVEELDALGKGKRSRTKLLMVSFKVSGFVDLGDVSSDDEDENYETAKSHSKKKAHSNIADNTNSLPLMEGEGNSLKVLGFTQSQRNTFFQILMRFGVGDFNWTEFAPRIKQKTWHEINAYGNLFLSHIAEDINDSPTFSDGVPKEGLQIQNVLVRIAVLLSIREKVKFASENPGTPLFSDDILSRYSDLVRKAWKEEHDLVLLRAVLKHGYGKWAAIFDDKDLNIQTIISHELNCDNVMERRVQIDFIKKRFLLLEKCLNDESANEYTDDISAKEGINE 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00648 1138 SMART chromo_7 190 244 IPR000953 -
Trre1g00648 1138 SMART chromo_7 99 175 IPR000953 -
Trre1g00648 1138 SMART DUF1087_2 823 892 IPR009463 -
Trre1g00648 1138 CDD CD1_tandem 98 172 - -
Trre1g00648 1138 SMART PHD_3 53 96 IPR001965 -
Trre1g00648 1138 ProSiteProfiles Chromo and chromo shadow domain profile. 192 254 IPR000953 -
Trre1g00648 1138 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 156 IPR023780 -
Trre1g00648 1138 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 240 IPR023780 -
Trre1g00648 1138 CDD CD2_tandem 190 239 - -
Trre1g00648 1138 MobiDBLite consensus disorder prediction 900 915 - -
Trre1g00648 1138 Pfam Helicase conserved C-terminal domain 595 708 IPR001650 -
Trre1g00648 1138 Gene3D - 96 187 - -
Trre1g00648 1138 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Trre1g00648 1138 Gene3D - 188 241 - -
Trre1g00648 1138 Gene3D - 278 514 IPR038718 -
Trre1g00648 1138 SUPERFAMILY Chromo domain-like 185 240 IPR016197 -
Trre1g00648 1138 SUPERFAMILY Chromo domain-like 66 175 IPR016197 -
Trre1g00648 1138 Pfam CHDCT2 (NUC038) domain 1051 1121 IPR012957 -
Trre1g00648 1138 Pfam CHD subfamily II, SANT-like domain 908 1039 IPR009462 GO:0003677|GO:0006338
Trre1g00648 1138 SMART helicmild6 624 708 IPR001650 -
Trre1g00648 1138 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 598 759 IPR001650 -
Trre1g00648 1138 Gene3D - 1009 1126 - -
Trre1g00648 1138 Coils Coil 475 495 - -
Trre1g00648 1138 CDD SF2_C_SNF 608 719 - -
Trre1g00648 1138 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 26 1093 - -
Trre1g00648 1138 SMART DUF1086_2 888 1042 IPR009462 GO:0003677|GO:0006338
Trre1g00648 1138 MobiDBLite consensus disorder prediction 897 916 - -
Trre1g00648 1138 Pfam SNF2-related domain 306 572 IPR000330 GO:0005524|GO:0140658
Trre1g00648 1138 Gene3D - 515 739 IPR027417 -
Trre1g00648 1138 Pfam CHD subfamily II, DUF1087 828 877 IPR009463 -
Trre1g00648 1138 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Trre1g00648 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 766 IPR027417 -
Trre1g00648 1138 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 470 IPR014001 -
Trre1g00648 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 505 IPR027417 -
Trre1g00648 1138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 95 IPR013083 -
Trre1g00648 1138 SMART ultradead3 282 481 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00648 Trre-Chr1 4881161 4888520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00648 308 769 RAD5 or RAD16-like Gene Family AT1G02670 23.985 4.20e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre1g00648 SNF2_N 4.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00648 K11643 - gmx:100790230 1597.02