Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00647 ATGGCTAACTGTCACCGTAACAACGTCGGAAACCTCGTTCTCGGCCACCACCACCACAACTCCACCAAAACACCGACATTCTCAAACCACTTCCGCTTATGGAACTCTCGCTCCATCGCTTCCCTCCGTCGCATCATCCTCGACGCCGTCAGCTGCGGTGCTAGCTCCCGTTACAATCACCGCCGACGAAGCACTCTCGACGAATATGACACTGAAGACTTCTCTTCAGCAACGAGATCGGATTCTTCTTCTTCCTTCGATAAAAGGAAACACAAACAAGAAAATCAAAGCTATAAACCGAATGCGAAATCGGAGAAACTTTCCGATCTTCTCAACATAGCGGAGATGGAAACAGAAGCGGAGGCGAAGAAGAAAGAAGAAGCGCTAGAAGAACTGAAGCGTCTCGTGAAGGATTTACACAACGAAGAAGATTCAGTTAAGCGGCGAGAAGCTGCAACCACCGTGAGAATGCTCGCTAAGGAGAATTTAGAAGTTCGTGAAACTCTCGCTATGCTCGGCGCGATTCCGCCTCTCGTCACAATGCTCGATTCGCAAGATGTTGATTCTCAGATCGCTTCACTCTATGCATTGCTCAATCTCGGAATCGGAAACGATGCAAATAAAGCAGCCATTGTTAAAGTTGGTTCTGTTCATAAGATGCTTAAGCTTATTGAATATTTGGATGGTATTGATTCTGCGGTTTCTGAAGCCATTGTTGCGAATTTTCTTGGATTAAGTGCTTTGGATTCGAATAAACCGATAATTGGGTCTTCTGCTGCAATATCCTTTTTAGTTAGAACCCTTCAGAGTTTAGATAAGAAAAAAAGTAGTAGAAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCAATTTTCCCAGCCAATATTCCATTCATTTTGGAAACTGATGTGGTACCATTTTTGATAAACTCGATTGGCGACATGGAAGTGACCGAAAGAAACCTCTCGATCCTTAGCAATTTGGTATCAAGTAGAGCGGGTAGAAAAGCGATAAGTAGTGTTCCTGATGCGTTTCCTATCTTGGTGGATGTATTGAATTGGACGGATTCACCTGAATGCCAAGAAAAGGTTTCTTATGTTTTGATGGTTATGTCGCATAAATCTTATGGTGACAAGCAGGCCATGATTGAAGCTGGGATTATGTCGTCGCTCCTTGAGTTGTCGCTTATCGGTAGTACTTTGTCTCAGAATCGGGCGTCAAGGCTGTTGGAAATTTTGAGAATGGACAAAGGGAAACAGGTTTCTGGTAACTACGGTGGAAGTTTAGGCACAGCTGTCTCCGCCCCAATTTGTGGAACTTCGAAACCAGATGAAGGAGGAGGAAAAGCATGTTTGGAAGAGGACGAAGATATGATGAGCGAGGAAAAGAAAGCAGTGAAACAATTAGTCCAATTAAGTTTGCAAAACAACATGAGAAAAATTGTGAAGAGGGCCAACTTGCCTCAAGATATCGTTCCATCAGATCATTTTAAGTCACTCACTTCAAGTTCAACTTCAAAGAGCTTACCATTCTGA 1545 0.433 MANCHRNNVGNLVLGHHHHNSTKTPTFSNHFRLWNSRSIASLRRIILDAVSCGASSRYNHRRRSTLDEYDTEDFSSATRSDSSSSFDKRKHKQENQSYKPNAKSEKLSDLLNIAEMETEAEAKKKEEALEELKRLVKDLHNEEDSVKRREAATTVRMLAKENLEVRETLAMLGAIPPLVTMLDSQDVDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMLKLIEYLDGIDSAVSEAIVANFLGLSALDSNKPIIGSSAAISFLVRTLQSLDKKKSSRNQVKQDALRALYNLSIFPANIPFILETDVVPFLINSIGDMEVTERNLSILSNLVSSRAGRKAISSVPDAFPILVDVLNWTDSPECQEKVSYVLMVMSHKSYGDKQAMIEAGIMSSLLELSLIGSTLSQNRASRLLEILRMDKGKQVSGNYGGSLGTAVSAPICGTSKPDEGGGKACLEEDEDMMSEEKKAVKQLVQLSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00647 514 Gene3D - 90 274 IPR011989 -
Trre1g00647 514 MobiDBLite consensus disorder prediction 67 104 - -
Trre1g00647 514 SUPERFAMILY ARM repeat 131 419 IPR016024 -
Trre1g00647 514 Coils Coil 455 475 - -
Trre1g00647 514 MobiDBLite consensus disorder prediction 83 99 - -
Trre1g00647 514 Gene3D - 275 427 IPR011989 -
Trre1g00647 514 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 26 514 - -
Trre1g00647 514 SMART arm_5 248 294 IPR000225 GO:0005515
Trre1g00647 514 SMART arm_5 162 202 IPR000225 GO:0005515
Trre1g00647 514 SMART arm_5 377 417 IPR000225 GO:0005515
Trre1g00647 514 SMART arm_5 295 333 IPR000225 GO:0005515
Trre1g00647 514 SMART arm_5 204 247 IPR000225 GO:0005515
Trre1g00647 514 Coils Coil 111 149 - -
Trre1g00647 514 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 173 215 IPR000225 GO:0005515
Trre1g00647 514 Pfam Armadillo/beta-catenin-like repeat 165 200 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00647 Trre-Chr1 4870091 4872045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00647 116 440 U-box Gene Family AT1G24330 30.117 2.32e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00647 - - psat:127098188 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00647 1 4870091 4872045 Trre5g05120 5 52505849 52507597 PCT