Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00629 ATGTCAAATTCTTGTTCTTCCTCAAACATCATTATTAATCCCTCCAAACAAATCCTTGTTTTTCTTTCACTAGTCATCACTCTTTCTTCCCTTCCAACAAAAACAAACTCACTTTTCTTCAACATAACAAATTTCGACGACCCAACCGTCGCTAAAAACATTTCATTCCAAGGTGACGGAAGAATCACCAATGGTTCCATTGATCTTAACAAAGTAAGTTACTATTTCCGTGTTGGAAGAGCAATTTATTCACAACCATTACATTTATGGGACAAAAACACAAAAACTCTCACAAGTTTCACTACACGTTTCACTTTCACAATCACTAGTTTAAACGACACTTCCTATGGTGACGGTTTTGTGTTTTTTTTAGCTCCTTTAGGATATCAAATTCCACCTAATTCAGCTGGTGGTGTTTTTGGTCTTTTTAATGCTACTACAAATAGTGATAATGTTATGAACTATGTTGTTGCTGTTGAGTTTGATACTTTTGTTGGTTCTATTGATCCACCAATGAAACATGTTGGTATTGATGATAATGCTTTGACTTCTGTTGCTTTTGGGAAATTTGATATTGATAATAATCTTGGTAAAGTTTGTCATGTTTTGATTGATTATAGTTCTGATAAGAAGATGTTGGAAGTTTTTTGGTCTTTTAAAGGTGATGGAAATTTTGGTAATTCTTCAATTTCTTATCAGATTGATCTTATGAAGAAAATGCCTGAATATGTTAATATTGGTTTTTCGGCTTCAACGGGTCTTGTGGCCGAAAGTAATGTTATTCATTCGTGGGAGTTTAGTTCGAATTTGAATTCGGATTCTACTCCCGATGTGTTGTTGGAGGGAAATGGAGAAAAAGGGTCGTCGAAAACGGTTGTGCTTATTGTTGCGGTGATTGTTCCGGTTATTTTGGTATTTTTGATAGCCAGTGTTGTTGGTTGGGTGATATTGAAGAGGAAAAGGAAGAATGTTGATGAAGGGTTGGATGAATATGGAATACCTGTTTCGGCGAAATTTGATTTGGATAAAGCGACTATACCGAGAAGGTTTGAATATAGCGAATTAGTTGCGGCTACTAATGGTTTTGCTGATGATAGAATGCTTGGAAGGGGAGGAGGATTTTCGCCGATTTCGAGAATTCAGAAAGAGTTTTCATCAATGAGCACAAAACTCGGCGATTTCGGGATGGCAAAACTCGTTGATCCAATGTTGAGGACACAAAGAACAGGTGTAGTTGGAACATATGGTTATCTAGCACCTGAATACATCAATGGAGGAAGGGCTAGTAAAGAATCTGATATGTATAGTTTTGGTATTGTTGCTTTGGAGATAACAACTGGTAGAAGGATTTTTCAAGATGGTGGTGATTTTCATGTGCCTTTGATGAATTGGGTTTGGGGACTTTATGTTGAAGGAAATCTTATGAGTGCTGCTGATGAAAGATTGAATTTGGAGTTTGATGTTAATGAAATGAAGAGTTTGCTTATTGTAGGGTTATGGTGTACTCATTCAAATGATAAAGAAAGACCTAAGGCTTATGAGGTGATTAAGGTTCTTAATCATGAAATGGCATTACCTGAACTTCCACTTGATATGCATGATCATGCTCCTCCAATTGTAAGTTTTAGGCCATCTAATTATGTATCTTTGCAACCACAAATGACTAATAGTCTTGTTTCTGATGGAAGATAG 1692 0.3617 MSNSCSSSNIIINPSKQILVFLSLVITLSSLPTKTNSLFFNITNFDDPTVAKNISFQGDGRITNGSIDLNKVSYYFRVGRAIYSQPLHLWDKNTKTLTSFTTRFTFTITSLNDTSYGDGFVFFLAPLGYQIPPNSAGGVFGLFNATTNSDNVMNYVVAVEFDTFVGSIDPPMKHVGIDDNALTSVAFGKFDIDNNLGKVCHVLIDYSSDKKMLEVFWSFKGDGNFGNSSISYQIDLMKKMPEYVNIGFSASTGLVAESNVIHSWEFSSNLNSDSTPDVLLEGNGEKGSSKTVVLIVAVIVPVILVFLIASVVGWVILKRKRKNVDEGLDEYGIPVSAKFDLDKATIPRRFEYSELVAATNGFADDRMLGRGGGFSPISRIQKEFSSMSTKLGDFGMAKLVDPMLRTQRTGVVGTYGYLAPEYINGGRASKESDMYSFGIVALEITTGRRIFQDGGDFHVPLMNWVWGLYVEGNLMSAADERLNLEFDVNEMKSLLIVGLWCTHSNDKERPKAYEVIKVLNHEMALPELPLDMHDHAPPIVSFRPSNYVSLQPQMTNSLVSDGR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00629 563 CDD lectin_legume_LecRK_Arcelin_ConA 40 270 IPR001220 GO:0030246
Trre1g00629 563 Pfam Legume lectin domain 39 273 IPR001220 GO:0030246
Trre1g00629 563 Gene3D - 35 279 - -
Trre1g00629 563 SUPERFAMILY Protein kinase-like (PK-like) 387 547 IPR011009 -
Trre1g00629 563 SMART serkin_6 278 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00629 563 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 275 IPR013320 -
Trre1g00629 563 Gene3D Transferase(Phosphotransferase) domain 1 374 536 - -
Trre1g00629 563 FunFam Lectin-domain containing receptor kinase A4.3 384 536 - -
Trre1g00629 563 ProSiteProfiles Protein kinase domain profile. 129 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00629 563 Pfam Protein kinase domain 388 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00629 563 ProSitePatterns Legume lectins beta-chain signature. 157 163 IPR019825 -
Trre1g00629 563 PANTHER - 385 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00629 Trre-Chr1 4768194 4770218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00629 385 532 Receptor kinase-like Gene Family AT5G10530 48.684 8.20e-38 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre1g00629 Lectin_legB 1.5e-62 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00629 - - vun:114193012 411.379