Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00623 ATGGGAACAAGTCTCAGCATTCCCAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGACCAGCTTAGATATGGATTATCATCTATGCAAGGATGGCGTGCAACAATGGAAGATGCACATGCGGCGCATCTTGATGTGGACAAGTCCACTTCGTTTTTTGGCGTTTATGACGGTCATGGAGGTAAGGCGGTTGCAAAGTTTTGCGCCAAGTATCTTCACCAACAGGTACTCAAGAGTGAAGAATACATAGTTGGAGATGTTGGAACATCTCTTCAGAAAGCATTTTTCAGAATGGACGAGATGATGCGTGGTCAAAGGGGATGGAGGGAACTAGCAGTCTTGGGTGATAAGGTAAAAGGGTTCAATGGAATGATTGAAGGATTGATTCGGTCTCCAAGATGCAGTGGCGATAATAAGGACCAAAGTGATGATTGGACCTTTGAGAAGGGGCCTCATTCTGATTTTGATGGACCAACTTCAGGAAGTACTGCGTGTGTCGCAATCATTAGAAACAGCCTACTTTTTGTTGCAAATGCTGGTGATTCACGCTGCGTAATATCTAGGAACGGCCAGGCATACAATTTATCTAGAGACCACAAACCTGAACTTGCGATCGAGAAGGAAAGAATATATAAAGCTGGTGGTTTTATTCATGCAGGACGAGTTAACGGGAGTTTAAATCTAGCAAGAGCTATAGGTGACGTGGATTTTAAGAATAATAGATTTCTTTCTGCTGAAAAACAAGTTGTGACTGCCAATCCAGACATAAACACTGTTGACCTTCGTGACGAAGATGAATTTATGGTGATAGCTTGTGATGGCATATGGGATTGCTTGTCAAGCCAACAATTGGTAGATTTTGTACGTCAAGAACTTCTCTTGAAAACCAAACTTTCTGAAGTTTGTGAAAGAGTGCTAGACCGGTGTTTGGCGCCATCTTTAGCTGTTGGTGACGGATGCGATAACATGACAATGATCTTGGTGCAGTTCAAAAAACCAATGCAGACTAGTGTACCAGCTCAAGAACAACCACCTTCAAATGAACAAGGTGCATCTGAACCAAGATTGGAGGGCAATTGA 1080 0.4241 MGTSLSIPKTEKFSEDGENDQLRYGLSSMQGWRATMEDAHAAHLDVDKSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKSEEYIVGDVGTSLQKAFFRMDEMMRGQRGWRELAVLGDKVKGFNGMIEGLIRSPRCSGDNKDQSDDWTFEKGPHSDFDGPTSGSTACVAIIRNSLLFVANAGDSRCVISRNGQAYNLSRDHKPELAIEKERIYKAGGFIHAGRVNGSLNLARAIGDVDFKNNRFLSAEKQVVTANPDINTVDLRDEDEFMVIACDGIWDCLSSQQLVDFVRQELLLKTKLSEVCERVLDRCLAPSLAVGDGCDNMTMILVQFKKPMQTSVPAQEQPPSNEQGASEPRLEGN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00623 359 SMART PP2C_SIG_2 28 330 IPR001932 -
Trre1g00623 359 MobiDBLite consensus disorder prediction 136 151 - -
Trre1g00623 359 Pfam Protein phosphatase 2C 142 312 IPR001932 -
Trre1g00623 359 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Trre1g00623 359 ProSiteProfiles PPM-type phosphatase domain profile. 23 330 IPR001932 -
Trre1g00623 359 PANTHER PROTEIN PHOSPHATASE 2C 19 329 IPR015655 GO:0004722|GO:0006470
Trre1g00623 359 CDD PP2Cc 23 330 IPR001932 -
Trre1g00623 359 MobiDBLite consensus disorder prediction 335 353 - -
Trre1g00623 359 MobiDBLite consensus disorder prediction 132 155 - -
Trre1g00623 359 SMART PP2C_4 13 328 IPR001932 -
Trre1g00623 359 SUPERFAMILY PP2C-like 4 332 IPR036457 -
Trre1g00623 359 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Trre1g00623 359 Gene3D - 1 331 IPR036457 -
Trre1g00623 359 MobiDBLite consensus disorder prediction 335 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00623 Trre-Chr1 4738381 4741646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00623 1 344 PP2C-type Phosphatase Gene Family AT2G25070 73.256 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00623 K17499 - gmx:100787633 571.237