Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00607 ATGGCATTGTTCCGTAAGTTCTTCTATAAGAAACCCCCTGATGGCCTTCTTGAAATCACTGTAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTTATGGACGAAGACGAATATAAAGTGTATATAGGAGGAATAATTAGGCAAATTGGTGAGCACTTCCCCGACGCTTCATTTATGGTGTTCAACATGAGGGAAGGAGAAAACCAAAGCCATATATCAAGCATTTTGTGTGACTATGACATGACTGTGATGGACTATCCAAGACAATATGAAGGTTGTCCATTACTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAATTGGCTTCAACTCGGACAACAAAATATCGTCTTGATGCATTGCGAACGAGGTGGATGGCCGGTTTTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAAATGTATACAGGGGAACAAAAAACACTGGATATGATATATAAGCAAGCGCCTCGGGAACTTTTGCAGTTGATGTCACCATTGAATCCGTTACCTTCACAATTAAGGTATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTTTGGATAGGGCACTTACATTGGACTGCGTAATTATACGACAAATTCCTAATATGGATGGAGAGGGTGGTTGCCGTCCTATATTTAGGATATATGGACAAGACCCTTTTATTCCTGCAAATCGGACTCCCAAAGTTCTCTTTTCTACTCCGAAAAAGAGCAAACTTGTTCGGCACTACAAGCAGGCTGATTGTGAACTAGTCAAGATTGACATCCATTGTCATGTTCAAGGCGATGTTGTACTTGAGTGTATTAGTTTGGAAGGTGATTTGGAACGTGAACAAATGATGTTCCGGGTTATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGCGATGAAATCGACATGTTATGGAATGCTAAAGATCACTTCCCTAAAAGTTTTAGAGTAGAGGTTCTTTTCTCAGATATGGAGGCTTCTTCGTCTTCTGCTATTTCAATTGATCTTCCTCGTATTGAAGAGAAAGAAGGTCTACCTGTTGAAGCATTTGCTAAAGTTAAGGAAATTTTCAGTCAGGTTGAGTGGCTCGATTCAAAGTCCGATGTAGCAAATATGCTACAACAGATCACAGCATCAAATATCCTTCTAGAAAGATTGGACAGTGGAGGTTTAGCTTCACCAACCGCCTTGCTAAACGAGTCATTGTCTGGAAGATTTAAATTTGATTCAAAGTCGCCAAACGAAACAGACAATCTCAAATCTTCTTTTCATGAGGAACTTCCCTTGTCTCCAATGCGATCGTCCGAGGATGTTCCTATGAAAAAAATGATTGAACCATTAAAAATAGAGGAATTGTCAGAAGAGAAAATCGAGACTATTGCAAGTTTAGGTCAAGCGAGCAAACCTATTCCTTCATTTGATCTGTCAAAAGATTCAGATTCTACTAAAGTTGAGACTGAATCATCAGAATCAAAACAATCATTGGAAAATTATCCTAAATTTTCTGCTTCTACAGCTCAGGTGGAACAATCTGTCCCCTTAATTGAACCATCAATAGATGCAGATTCTATGAAAAAGAAGACTGGATCATTGGAATCTGAGGAAAAGAAGATTGAATCATTAGCATCAAAGGCGGTATTGGAAAACGACACCATGTTTCCTGCATCTGATTCTTCTACTAAAGCAAATTCTGTGAAAAGTATTGGACTGTTGGGATCAAAAGAAAAGGAGATTGCATCATTAGACTCAAAGGCACTGTTGGAGAATGATAGCGGAGTTAAATCCAAACCAAAGATGCGTCCAGAAGCTGAGATAAGAAGTCCGAGTTCTGCAGGTCAAGAGAAATTTTCAGCGTCCTCATTTGAATCAATTGGGGATGCTACAATGGAAAAGAAGAAAAAACCTTCAGATTTAACGGCATCACCAGAAAATAACATCAAGACTCCTGCACCGGCAGATTCAAATTCTACTGCGATGAAGATTGAATCATTAGAATCAAAGGCACCAGTGGAAAATGATACCAAGTTTCCTACGTCTACGGCTCAAGCAAAACAATCTACTCCCTCAATCAAGCCATCCACAGAAGCAAATTCAGTGAAACAGTCGATGGAGCAATTAGAGTCAAAGAAAAAGGATATTGAATCAATAGAATCAAAGTCATTGGAAAATGATACCAAGGGGAAACAATCAGTTCCCTTAATTCAAACATCAGTGGATGCAAGTTCAATGAAAACAATGAATGAGAAATCAGAATCAACGGCGTTGTCAGAAAAGGATACCAAGAGTCCCACATCCGAGGTTGATAAGAAACAAACTAGTCCTTCACTTGAACCCACCTTTGATGAAAAATCAATTAAAAAGAAGATTGATTCTCAAGAGTTGCAGGTTTCTCTTCAGCTACCAACTCAATCGAAAATAATTTCTCCACGGATACATCAAGCTAATCGATCAGCTACAGCTTCTTATTCTTCTAATTCCTCGCTAGGTTCACCTGTAGGATCGGCTCTCGGAATAACATCTGTGTTGCAAGATCATGCACCAATGGATATCAAAGAAGACGTCACTCATGCAGTGTCGATATCTCCTCCTTCAGACTCAAAGGTGCCAAAGTCTGTAGAGACTTGTTCTACAAGTATTCCTACAACATCATCAACACCGGCATTGCTTCCATCTTCGCCGTTAAAGTCTTCAGCAGATCCTCCTGATGCTGTCGATAAGACTTCTAAACCTCTTGCTCCTATTCCTCCTCCACCTCCACAACAAGAGCCTACTTCAAAATTGATGCAATCTACTAATACACAACATGGTGAAAATTCAACGCATGATAAAAATCAGATATCATCTGCTATTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCGTCCCTTCCTGAAACATCTCTTTCCACCATCAAAGATTCATCAAAAATTCCTTCTTGTCCGCCACCTCCACCACCACCACCATCTTCAACCGGACAAACTTCATCATCATCAATACCTCCTCCTCCACTTCCTCCTCCACAGAGTATGAACAACTCTGTTGCTTTGCCTGGTCCTCCTCCTCCACCTCCACCGCCAAGCCAACCCGGAACCACTCCTGGTTCCACTTCTACACAGTCTGTGCCGCCACCACCCCCTCCTCCAGCTTCTGCAACCCAAAATTCTCTGTCTAAAAGCTCTCCAAATGTTCCACCTGTACCTCCACCTCCTTCTGCCAATGGATTAGCAAAACCCGGCACTGCACCACCTCAGCCCCCTGGAATTCCTGGACCACCTCAGCCTCCTGCAATTCCTGGACCACCAGGAAATGCACCTCCAGTTCCTGGACCACCTGGAAATGTGCCTCCAATTCCTGGACCACCTTCCGGTGCATTTGGTGCAAAGGGACGCGGATTGCTACGAACTACTGCAAAAACTCAGACTAAAAGGAGCAATCTAAAACCTTACCATTGGTTAAAGTTAACAAGGGCCATGCAAGGTAGCTTGTGGGCTGAGACGCAGAAACTTGATGAAGCTAGTAGGGCTCCTGAGTTTGACATGTCTGAACTTGAGACTCTTTTCTCTGCAGCTACTCCAAGTAATAATAATGAAAAAGGAGGAAATTCAAATCGCCGTGGCTCATCGCAAAAACCTGACAAAGTTCAATTAATTGAACTCAGACGAGCATATAACTGTGAGATTATGCTTACAAAAGTCAAAATCCCATTGCCTGATTTAATGGGTCATGTTCTCGCATTGGACGATTCTGTATTATATGTTGATCAGGTTGAGAACCTCATTAAGTTCTGTCCGACTAAAGAAGAGATGGACCAGCTCAAGGCATACACCGGAGATAAGGACAATTTGGGGAAGTGTGAACAGTTCTTCTTAGAGTTAATGAAAGTTCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTGTTTTAAGATGCAATTCTGCTCCCAGGTTCTAGAACTCAAAAGAGACTTGAATATCGTAAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAATTGAAAAGAATCATGCAGACCATTCTTTCGCTCGGAAATGCTTTGAACCATGGAACTGCAAGAGGTGCTGCTGTTGGGTTCCGATTGGATAGTCTTCTTAAACTCACTGATACACGAGCCAGAAACAACAAAATGACCCTCATGCATTATCTTTGTAAGGTGCTTTCTGAAAAGCTTCCAGAACTTTTAGATTTCCACAAAGACCTAGTTAATTTGGAGGCTTCAACAAAGATACAATTGAAATTTTTGGCGGAAGAAATGCAAGCTATTAGCAAAGGACTGGAAAAAGTAATTCAAGAACTGACCGCATCAGAGAATGATGGACCTGTGTCAGAAACCTTCTGCCAGATTCTGAAAGAGTTTCTTAGTGACGCTGAAGCTGAAGTGAGGTCTTTGGCTCAGCTTTATGCCAATGTGGGTAGAAATGCAGATGCATTAGCGTCATACTTCGGAGAAGACCCAGCACGTTGCCCATTTGAACAAGTTGTAACTACTCTGCTGAACTTTGTGAGGATGTTCATCCGAGCACACGACGAAAATTGCAAGCAGATTGAATATGATAAAAAGAAAGCCGAGAAGGAAGCAGCAGCAGAAAATGAAAAGTTGAAGCTAGCTGCTAAAAATGACTCTCCGCGTATGATGAGAACGACCATCAAGAGTGGTGATATCAAATAA 4734 0.4144 MALFRKFFYKKPPDGLLEITVRVYVFDYCFTTDVMDEDEYKVYIGGIIRQIGEHFPDASFMVFNMREGENQSHISSILCDYDMTVMDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGQQNIVLMHCERGGWPVLAFMLAALLIYRKMYTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRQIPNMDGEGGCRPIFRIYGQDPFIPANRTPKVLFSTPKKSKLVRHYKQADCELVKIDIHCHVQGDVVLECISLEGDLEREQMMFRVMFNTAFIRSNILMLNRDEIDMLWNAKDHFPKSFRVEVLFSDMEASSSSAISIDLPRIEEKEGLPVEAFAKVKEIFSQVEWLDSKSDVANMLQQITASNILLERLDSGGLASPTALLNESLSGRFKFDSKSPNETDNLKSSFHEELPLSPMRSSEDVPMKKMIEPLKIEELSEEKIETIASLGQASKPIPSFDLSKDSDSTKVETESSESKQSLENYPKFSASTAQVEQSVPLIEPSIDADSMKKKTGSLESEEKKIESLASKAVLENDTMFPASDSSTKANSVKSIGLLGSKEKEIASLDSKALLENDSGVKSKPKMRPEAEIRSPSSAGQEKFSASSFESIGDATMEKKKKPSDLTASPENNIKTPAPADSNSTAMKIESLESKAPVENDTKFPTSTAQAKQSTPSIKPSTEANSVKQSMEQLESKKKDIESIESKSLENDTKGKQSVPLIQTSVDASSMKTMNEKSESTALSEKDTKSPTSEVDKKQTSPSLEPTFDEKSIKKKIDSQELQVSLQLPTQSKIISPRIHQANRSATASYSSNSSLGSPVGSALGITSVLQDHAPMDIKEDVTHAVSISPPSDSKVPKSVETCSTSIPTTSSTPALLPSSPLKSSADPPDAVDKTSKPLAPIPPPPPQQEPTSKLMQSTNTQHGENSTHDKNQISSAIPPPPPPPPPPPPPSLPETSLSTIKDSSKIPSCPPPPPPPPSSTGQTSSSSIPPPPLPPPQSMNNSVALPGPPPPPPPPSQPGTTPGSTSTQSVPPPPPPPASATQNSLSKSSPNVPPVPPPPSANGLAKPGTAPPQPPGIPGPPQPPAIPGPPGNAPPVPGPPGNVPPIPGPPSGAFGAKGRGLLRTTAKTQTKRSNLKPYHWLKLTRAMQGSLWAETQKLDEASRAPEFDMSELETLFSAATPSNNNEKGGNSNRRGSSQKPDKVQLIELRRAYNCEIMLTKVKIPLPDLMGHVLALDDSVLYVDQVENLIKFCPTKEEMDQLKAYTGDKDNLGKCEQFFLELMKVPRVESKLRVFCFKMQFCSQVLELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGAAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPELLDFHKDLVNLEASTKIQLKFLAEEMQAISKGLEKVIQELTASENDGPVSETFCQILKEFLSDAEAEVRSLAQLYANVGRNADALASYFGEDPARCPFEQVVTTLLNFVRMFIRAHDENCKQIEYDKKKAEKEAAAENEKLKLAAKNDSPRMMRTTIKSGDIK 1577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00607 1577 MobiDBLite consensus disorder prediction 867 1145 - -
Trre1g00607 1577 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Trre1g00607 1577 Pfam Formin Homology 2 Domain 1154 1526 IPR015425 -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 962 981 - -
Trre1g00607 1577 SMART it6_source 663 1575 IPR015425 -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 624 638 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 686 717 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 1077 1138 - -
Trre1g00607 1577 Gene3D Formin, FH2 domain 1171 1566 IPR042201 -
Trre1g00607 1577 PANTHER FORMIN-J 1 640 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 805 848 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 423 455 - -
Trre1g00607 1577 SMART PTEN_C2_2 197 337 IPR014020 -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 593 848 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 718 738 - -
Trre1g00607 1577 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 938 961 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 482 549 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 739 764 - -
Trre1g00607 1577 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 187 IPR029021 -
Trre1g00607 1577 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1227 1553 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 873 906 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 593 617 - -
Trre1g00607 1577 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Trre1g00607 1577 Coils Coil 710 733 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 534 549 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 1203 1226 - -
Trre1g00607 1577 Coils Coil 1527 1561 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 993 1007 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 765 780 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 653 676 - -
Trre1g00607 1577 Gene3D - 196 341 - -
Trre1g00607 1577 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1152 1552 IPR015425 -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 1203 1227 - -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 1014 1047 - -
Trre1g00607 1577 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Trre1g00607 1577 MobiDBLite consensus disorder prediction 505 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00607 Trre-Chr1 4607329 4615910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00607 744 860 FH2 protein (formin) Gene Family AT2G25050 37.600 5.46e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00607 - - tpra:123915978 2393.62