Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00606 ATGGATAAAAAGGTGGAAACTCTTCAATTAGAGTTACAACAAGTGAGAGAAGAGAACAATACTTTAAGATTTATGCTTGAAGTTATGAGTATCAAGTGCACAAAGTTTGAGTCCCAACTTCAAGAGATTAAAAAGGAAGAACACAAAGGAACAAGTTCAAATCAAATTGGTGTAGTACCTAACCTTGACTCAAACAAAAGAGCAAGACTAGAGTTTCCAACAGCAAAAAAGCCATTAGAAGTCTTTGTCAGAACCAATCCTAATGATGATAGTTTGACAATAAAAGATGGATATCAATGGAGGAAGTATGGGCAGAAAGTCACCAAAGACAATGCTTCTCCTAGAGCTTATTTTAGGTGCTCCATGGCTCCTAGTTGCCCTGCAAAAAAGAAGGTACAAAAATGCATACATGATAGGTCTATCATTGTTGTAACATATGATGGAGAGCACAACCATGGTGTCCCTCATGAGTCATTCAAACCATCTTCATCCACACCTAAATTTTCATCAATATTTAATAAAAATTTACCACCCACATTAAATGACAAAGAAACCATAAACACTGGAATTTGTGAGGATGTCATGCAACAGTTTGGCTATGGAAAGCACATCAAAATTCAAGAATATGCAAGTTCCCTAATCAAAGATTCTGATTTCACTGCAACATTGGCCGAAGCAGTTGTACAAAATATCACCGGTCAACATAAGCGACAAGGTCTAAACCTCAATTTGAATCTTTCAGAAGAGTGA 750 0.364 MDKKVETLQLELQQVREENNTLRFMLEVMSIKCTKFESQLQEIKKEEHKGTSSNQIGVVPNLDSNKRARLEFPTAKKPLEVFVRTNPNDDSLTIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCIHDRSIIVVTYDGEHNHGVPHESFKPSSSTPKFSSIFNKNLPPTLNDKETINTGICEDVMQQFGYGKHIKIQEYASSLIKDSDFTATLAEAVVQNITGQHKRQGLNLNLNLSEE 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00606 249 SMART WRKY_cls 94 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00606 249 Coils Coil 5 46 - -
Trre1g00606 249 ProSiteProfiles WRKY domain profile. 89 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00606 249 Gene3D WRKY domain 80 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g00606 249 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00606 249 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 234 IPR044810 GO:0003700
Trre1g00606 249 SUPERFAMILY WRKY DNA-binding domain 91 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00606 Trre-Chr1 4605197 4606706 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00606 66 235 WRKY Transcription Factor Family AT1G80840 41.622 8.66e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g00606 WRKY 5.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00606 - - mtr:11435998 394.43