Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00604 ATGGAATCAACATGTGTGGATACTTCTCTCAATCTTAACATTAATCATCCTTCTTCTGCTACATACAAGGATGAAATTTTGGTTGAAGAGTTACATCGTCTCAATTGTGAGAACAAGAGGCTAAGTGAAACATTGAGCAACATGTGTGAAAATTATGAAGCTATGCAAAAGCAATTGAATGAATTGATGAATCAAAATTGTGAACACCAAACTCAAGAATCAAGGAAGAGAAAAGCTGAGAGTGAAAATTGCAACAATATGTTTGGTACTAATAGAGGAATTAATAATGAGTGCAGCACTACTGATGAAGAATCATTAATCAAAAGGCCATGTAGGGATATTTCATCACCTAAGTCTTATAAGGTTCTTGTGAAGACAGAAGCATCTAGTAATAGCTTATATGTGATGGATGGATATCAATGGAGGAAATATGGTCAGAAGGTTACTAGAGATAATCCCTCTCCTAGAGCTTACTTTAGGTGCTCCAGTGCTCCAAGCTGCCCAGTTAAAAAGAAGGTACAAAAAAGTTTAGAAGACCCTACTATACTTGTTGCAACATATGAAGGAGAGCACAACCATGGTCATGAGAAAGCTGAATTATCAATGATATCAAGCCAAATTGAAGATTCCTTTATAGGTTCAGTTCATGTTACTTCACCTAAACAAATTATTCAAAGGTCTTCTCCATCCATGAAGATTAACAATGTTGACAATGTTCCAAAATCATCTATCCAACAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAATGATCCTAATTTCACTGCAGCACTTGCTAGTGCCATTTCAGGAAGAATTTTGGACCATACTTCAAATAAGGCCAATTGGTGA 855 0.3567 MESTCVDTSLNLNINHPSSATYKDEILVEELHRLNCENKRLSETLSNMCENYEAMQKQLNELMNQNCEHQTQESRKRKAESENCNNMFGTNRGINNECSTTDEESLIKRPCRDISSPKSYKVLVKTEASSNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSSAPSCPVKKKVQKSLEDPTILVATYEGEHNHGHEKAELSMISSQIEDSFIGSVHVTSPKQIIQRSSPSMKINNVDNVPKSSIQQFLVQQMATSLTNDPNFTAALASAISGRILDHTSNKANW 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00604 284 Pfam WRKY DNA -binding domain 137 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00604 284 Coils Coil 31 82 - -
Trre1g00604 284 ProSiteProfiles WRKY domain profile. 130 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00604 284 SMART WRKY_cls 135 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00604 284 SUPERFAMILY WRKY DNA-binding domain 132 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g00604 284 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 25 275 IPR044810 GO:0003700
Trre1g00604 284 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00604 Trre-Chr1 4594748 4596621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00604 3 274 WRKY Transcription Factor Family AT1G80840 44.554 8.52e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g00604 WRKY 2.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00604 - - gmx:100810978 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00604 1 4594748 4596621 Trre5g05115 5 52427544 52429868 PCT