Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00602 ATGGAGGACTTGAAGGCAAACATGTTATTTGGCAAGTACGAGGTGGGAAGAATACTAGGTAAAGGAACATTTGCAAAAGTGTACTATGCTAAAGAAATTGCTACGGGTGAAGGTGTAGCAATTAAAGTTATAGACAAAGACAAAGTGAGAAAAGAAGGCATGATGGAACAAATCAAACGTGAAATTTCTGTGATGAGGTTAGTAAAACATCCAAACATCGTCAACCTTAAAGAAGTCATGGCAACAAAGACCAAAATTTTGTTCGTCATGGAGTATGCACGTGGCGGTGAATTATTCGATAAAGTTGCGAAAGGTAAATTTAAAGAAGAACTTGCAAGGAAGTACTTCCAACAACTTATTAGCGCGGTTGATTATTGTCATAGTAGAGGCGTTTCACACCGCGATTTGAAACCTGAAAATTTGTTACTTGATGAAAACGGAGATCTTAAGGTGTCTGATTTCGGACTCTCGGCTTTGCCTGAACAACTTCGTCAGGACGGACTTTTACATACTCAATGTGGAACTCCTGCTTACGTGGCACCCGAGGTAGTTAGAAAAAGAGGTTATAGCGGTTTTAAAGCCGATACTTGGTCATGTGGTGTTATTCTTTATGCTTTACTTGCTGGATTTTTACCTTTTCAACATGAAAATTTAATGTCCATGTATAATAAAGTTTTCAAAGAAGAGTATCAATTTCCTCCTTGGTTTTCGCCTGAATCGAAGAGATTAATCTCGAAGATTCTAGTAGCTGATCCAGAAAGAAGAATCACTATTCCATCAATCATGAATGTTCCATGGTTTCGAAAAGGTTTATCGTCACTATCAACAATTACTACTTCAAATGATGATGTAGAATTAGAATCAAAGGTGATTGATTCTTCTCCACCACAATTTTTCAATGCGTTCGAGTTTATTTCTTCAATGTCTTCAGGGTTCAATCTTTCTGGTTTGTTCGAGGAAAAGAAAAAAAGGGGTTCGATTTTTACTTCAAAGTGTTCGGTTTCAGAGATTGTGACAAAAATCGAAAGTGCTGCGAAAAATTTAAAGTTTAAGGTAAAGAAGGTTAAGGATTTCAAACTGAAGTTACAAGGGTCTTGTGAAGGAAGAAAGGGAAAGCTGGCCATGTCGGCGGAGATATACGAGGTGGCGCCGGAGCTTGCGGTGGTCGAATTTTCCAAGAGTTCCGGTGATACTTTTGAATATGTTAAGTTGTTTGAAGAAGATGTTAGGCCTGCTCTCAAAGACATTGTTTGGTCATGGCAAGGGGAATGA 1272 0.3836 MEDLKANMLFGKYEVGRILGKGTFAKVYYAKEIATGEGVAIKVIDKDKVRKEGMMEQIKREISVMRLVKHPNIVNLKEVMATKTKILFVMEYARGGELFDKVAKGKFKEELARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGDLKVSDFGLSALPEQLRQDGLLHTQCGTPAYVAPEVVRKRGYSGFKADTWSCGVILYALLAGFLPFQHENLMSMYNKVFKEEYQFPPWFSPESKRLISKILVADPERRITIPSIMNVPWFRKGLSSLSTITTSNDDVELESKVIDSSPPQFFNAFEFISSMSSGFNLSGLFEEKKKRGSIFTSKCSVSEIVTKIESAAKNLKFKVKKVKDFKLKLQGSCEGRKGKLAMSAEIYEVAPELAVVEFSKSSGDTFEYVKLFEEDVRPALKDIVWSWQGE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00602 423 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Trre1g00602 423 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Trre1g00602 423 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 414 - -
Trre1g00602 423 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Trre1g00602 423 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00602 423 FunFam Non-specific serine/threonine protein kinase 6 300 - -
Trre1g00602 423 Pfam NAF domain 296 354 IPR004041 GO:0007165
Trre1g00602 423 CDD CIPK_C 300 414 - -
Trre1g00602 423 CDD STKc_SnRK3 12 266 - -
Trre1g00602 423 SUPERFAMILY Protein kinase-like (PK-like) 9 280 IPR011009 -
Trre1g00602 423 Gene3D Transferase(Phosphotransferase) domain 1 93 272 - -
Trre1g00602 423 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00602 423 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00602 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Trre1g00602 423 FunFam Non-specific serine/threonine protein kinase 294 418 - -
Trre1g00602 423 ProSiteProfiles NAF domain profile. 294 319 IPR018451 GO:0007165
Trre1g00602 423 Gene3D Kinase associated domain 1, KA1 294 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00602 Trre-Chr1 4558564 4559835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00602 2 423 CBL-interacting serine-threonine protein kinases AT5G25110 67.661 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre1g00602 Pkinase 3.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00602 - - tcc:18587713 635.95