LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g00602	ATGGAGGACTTGAAGGCAAACATGTTATTTGGCAAGTACGAGGTGGGAAGAATACTAGGTAAAGGAACATTTGCAAAAGTGTACTATGCTAAAGAAATTGCTACGGGTGAAGGTGTAGCAATTAAAGTTATAGACAAAGACAAAGTGAGAAAAGAAGGCATGATGGAACAAATCAAACGTGAAATTTCTGTGATGAGGTTAGTAAAACATCCAAACATCGTCAACCTTAAAGAAGTCATGGCAACAAAGACCAAAATTTTGTTCGTCATGGAGTATGCACGTGGCGGTGAATTATTCGATAAAGTTGCGAAAGGTAAATTTAAAGAAGAACTTGCAAGGAAGTACTTCCAACAACTTATTAGCGCGGTTGATTATTGTCATAGTAGAGGCGTTTCACACCGCGATTTGAAACCTGAAAATTTGTTACTTGATGAAAACGGAGATCTTAAGGTGTCTGATTTCGGACTCTCGGCTTTGCCTGAACAACTTCGTCAGGACGGACTTTTACATACTCAATGTGGAACTCCTGCTTACGTGGCACCCGAGGTAGTTAGAAAAAGAGGTTATAGCGGTTTTAAAGCCGATACTTGGTCATGTGGTGTTATTCTTTATGCTTTACTTGCTGGATTTTTACCTTTTCAACATGAAAATTTAATGTCCATGTATAATAAAGTTTTCAAAGAAGAGTATCAATTTCCTCCTTGGTTTTCGCCTGAATCGAAGAGATTAATCTCGAAGATTCTAGTAGCTGATCCAGAAAGAAGAATCACTATTCCATCAATCATGAATGTTCCATGGTTTCGAAAAGGTTTATCGTCACTATCAACAATTACTACTTCAAATGATGATGTAGAATTAGAATCAAAGGTGATTGATTCTTCTCCACCACAATTTTTCAATGCGTTCGAGTTTATTTCTTCAATGTCTTCAGGGTTCAATCTTTCTGGTTTGTTCGAGGAAAAGAAAAAAAGGGGTTCGATTTTTACTTCAAAGTGTTCGGTTTCAGAGATTGTGACAAAAATCGAAAGTGCTGCGAAAAATTTAAAGTTTAAGGTAAAGAAGGTTAAGGATTTCAAACTGAAGTTACAAGGGTCTTGTGAAGGAAGAAAGGGAAAGCTGGCCATGTCGGCGGAGATATACGAGGTGGCGCCGGAGCTTGCGGTGGTCGAATTTTCCAAGAGTTCCGGTGATACTTTTGAATATGTTAAGTTGTTTGAAGAAGATGTTAGGCCTGCTCTCAAAGACATTGTTTGGTCATGGCAAGGGGAATGA	1272	0.3836	MEDLKANMLFGKYEVGRILGKGTFAKVYYAKEIATGEGVAIKVIDKDKVRKEGMMEQIKREISVMRLVKHPNIVNLKEVMATKTKILFVMEYARGGELFDKVAKGKFKEELARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGDLKVSDFGLSALPEQLRQDGLLHTQCGTPAYVAPEVVRKRGYSGFKADTWSCGVILYALLAGFLPFQHENLMSMYNKVFKEEYQFPPWFSPESKRLISKILVADPERRITIPSIMNVPWFRKGLSSLSTITTSNDDVELESKVIDSSPPQFFNAFEFISSMSSGFNLSGLFEEKKKRGSIFTSKCSVSEIVTKIESAAKNLKFKVKKVKDFKLKLQGSCEGRKGKLAMSAEIYEVAPELAVVEFSKSSGDTFEYVKLFEEDVRPALKDIVWSWQGE	423

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre1g00602	423	ProSitePatterns	Protein kinases ATP-binding region signature.	19	42	IPR017441	GO:0005524
Trre1g00602	423	Gene3D	Phosphorylase Kinase; domain 1	4	92	-	-
Trre1g00602	423	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	7	414	-	-
Trre1g00602	423	FunFam	Non-specific serine/threonine protein kinase	4	92	-	-
Trre1g00602	423	Pfam	Protein kinase domain	13	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Trre1g00602	423	FunFam	Non-specific serine/threonine protein kinase	6	300	-	-
Trre1g00602	423	Pfam	NAF domain	296	354	IPR004041	GO:0007165
Trre1g00602	423	CDD	CIPK_C	300	414	-	-
Trre1g00602	423	CDD	STKc_SnRK3	12	266	-	-
Trre1g00602	423	SUPERFAMILY	Protein kinase-like (PK-like)	9	280	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g00602	Trre-Chr1	4558564	4559835	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g00602	2	423	CBL-interacting serine-threonine protein kinases	AT5G25110	67.661	0.0	621

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Trre1g00602		Pkinase	3.7e-76	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g00602	-		-	tcc:18587713	635.95

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