Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00581 ATGGTTTGTGAGATGGAAAGTGATTGTATTGAAGACATGATGGACATTGAAGTTCTATCATCAATGTGGCCAGAAGATGTTGGAACTGATGTTGGAAAACAGTTCAACATAGAAAAACCAGGAAGAGATCAAGATATGTTGGAAGAAGTAACAATCTTAGAAGAACCAGCTATAGCTGATTTTCAAAGATTAATGGAGTTAACAAATTATACAGAAAAAGGGTCATCTCAATTAGCTTATTTAATGCAACATTGGGAGTATAAGCAAGCGAACGCGGTTCGACTTCTTCGAGAAGAGCTTGATAACCTTAGTAAACAAAGGAAGGAAGTTGAGCTTAGAAAATTGGAGATAATTAAAGATAATAACCGATTCGAGGAAGAGAGTTACGCGGGTGATAAACGTCCGGTTTCGATATTAGATGATGCTTATTATACATGGCAAGATCTACCTGTTGCAATAAGGAAAAGTGATGTTGTTGTCGAAAACAAGAGGGTTGAAATTGAAGCCGAGTATGATACTGTTGTTTATTGGAAACATCGGTCGCAAGATTTGGAAAAACAGTTGGGGGCGAGTATTCGAAGAGAGGAGATATTGAAGGAAAAATTGCAAGAAAGTATTGAGACTATTGAAAGACAATCCTCACCTGTGGAAGAATTGTCACAGATTCTTAAAAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACAGATGTCGAAATTTTCACGGGATCAGGTGTGAAGGAGTCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAGTGGCTGCAAAAAAGGAAATAACTTTTGAGACGGAACTATTTGGATCGAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAGCCGGTGAAACAATTGGAGTAAACTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAACTAAGGGAAGAAATTGCAGTTCAGAAGGCAAAGGAAACAGAACTTAATAAAACAATTCATATTACAGAGGAGACAATGAGAGCAAAACAAATGCTGGCAACAATGTCGCATGAGATAAGATCGCCACTTTCTGGTGTTGTTAGCATGGCTGAAATTCTTACTACAACAAAACTCGATAAGGAGCAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATTAATGACATACTTGATCTTTCCAAGGTTGAATCAGGAGCTATGAAATTGGAAGCTACGAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTACTCCAAACAGCTGCGGCATCGTTGCAGAAAATGTTAACATTGGAAGGAAACATAGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGATTAGGCAGATTCTAACAAATTTAGTAAGCAATGCTGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTATGTTATTCCAGAGCCACCATTTGCCAAAGCAGAAGAATCTAACCAAAAGGTGACAGAAAATCAGTCTATGAAGGAAGAGAAGTATACATCATCACCAAGAAGTACTAGATGTGATCAAAATCTTATTGATGATAAAAAACAGATTGACCAACCAATCCAAAATCATGCATTTAGCAATGAATGTAGATCTTCAGTTAACAGTGAATGCTCAATGAATGATGATGATACTGAGGAACAACATCATTCAACCGAAACAACAGTGTGGATACGTTGTGATGTGTACGACACAGGAATTGGCATACCAGAAAAAGCTATACCTACTTTATTTAGAAGGTACATGCAAGTTAGTGCCGACCATGCTCGAAAATACGGAGGCACTGGTCTAGGACTAGCAATATGTAAACAACTGGTTGAGTTGATGGGGGGTCGTCTAACGGTGACTAGTAAAGAACATTGTGGTTCTACATTCACATTCATACTACCATACAAAGTATCAACAACTTGTGATAATTCTGATGATCCAGATGAGCTTTCGGATGTCGATAATAATGAAGATGACACAACTGAGGGATTCTTCCAATTCCAACCGCGAACTTTAGGCTCGCTTTTTACCTCTAATGGATCCACAAGGCCACACAGAATCTCACACAAGTTCAATGGTTTTCCAGACAGCAATTGTCACTCAAATCTCTCTAGTAACATAATTTCAAATGGAACAAATTCACTTGAGGATGCGTCTTCTGTTATTGCCGATGCTTCAGATATGTCTGAATCAACAAGTTCAACGAGTCATAGCATAGAAACAAAGCATGAAAGTTTAGTTAATGGAAACAAACAGAACCATGATAATAAGGCGCATGATAAGTTACAAAATGGTTTTGCAAACTCTAGTCAATGTAAGGATGCAAGTAGAGAAATGAATTTAGAAACAAAATCAAGTGAACCGCAGCGAATATATCAGGGTCAAGGGAAGGAAGATAGTACTAGTAGCACTAGCATATCATCAGAAGTAACCAAATCGACATTAAAACCGAATATTCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACAAAGTCAATGATGAAGCAGCTAGGATATACCATGGATGTTGTGAATAATGGAGTGGAAGCCATACGCGCAGTTCAGAGTCAATCTTACGACATTATTTTAATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTAGGTCTTATGAGAAAACAGGCAACTGGGATGCTGCAAGAGAAGCTGGAATTGAACATAGTTTATCGGCTTCAGATGAATGTTCCGTACCACCTAAAAAGCGCATCCACATTGTCGCGATGACAGCAAACACAATGTCAGAGAGTGCTGAAGAATGTTTCGCCATCGGTATGGACTCATTTGTGTCAAAACCAGTCACATTACAGAAAATGAAAGAGTGTCTTGAAAAGTATCTAAGGTGA 3015 0.3768 MVCEMESDCIEDMMDIEVLSSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPAIADFQRLMELTNYTEKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEIIKDNNRFEEESYAGDKRPVSILDDAYYTWQDLPVAIRKSDVVVENKRVEIEAEYDTVVYWKHRSQDLEKQLGASIRREEILKEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGVAAKKEITFETELFGSKTFLIYVEPVFSKAGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILTTTKLDKEQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAASLQKMLTLEGNIADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVIPEPPFAKAEESNQKVTENQSMKEEKYTSSPRSTRCDQNLIDDKKQIDQPIQNHAFSNECRSSVNSECSMNDDDTEEQHHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTTCDNSDDPDELSDVDNNEDDTTEGFFQFQPRTLGSLFTSNGSTRPHRISHKFNGFPDSNCHSNLSSNIISNGTNSLEDASSVIADASDMSESTSSTSHSIETKHESLVNGNKQNHDNKAHDKLQNGFANSSQCKDASREMNLETKSSEPQRIYQGQGKEDSTSSTSISSEVTKSTLKPNILLVEDNKINIMVTKSMMKQLGYTMDVVNNGVEAIRAVQSQSYDIILMDVYMPVMNGLQTTKLIRSYEKTGNWDAAREAGIEHSLSASDECSVPPKKRIHIVAMTANTMSESAEECFAIGMDSFVSKPVTLQKMKECLEKYLR 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00581 1004 CDD HisKA 374 436 IPR003661 GO:0000155|GO:0007165
Trre1g00581 1004 SMART HKATPase_4 486 680 IPR003594 -
Trre1g00581 1004 ProSiteProfiles Histidine kinase domain profile. 382 680 IPR005467 -
Trre1g00581 1004 MobiDBLite consensus disorder prediction 805 819 - -
Trre1g00581 1004 ProSiteProfiles Response regulatory domain profile. 861 1003 IPR001789 GO:0000160
Trre1g00581 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 678 IPR003594 -
Trre1g00581 1004 FunFam Histidine kinase 5 854 1004 - -
Trre1g00581 1004 Coils Coil 346 366 - -
Trre1g00581 1004 MobiDBLite consensus disorder prediction 528 552 - -
Trre1g00581 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 440 IPR036097 GO:0000155|GO:0007165
Trre1g00581 1004 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 8 1003 - -
Trre1g00581 1004 MobiDBLite consensus disorder prediction 828 852 - -
Trre1g00581 1004 SUPERFAMILY CheY-like 860 1004 IPR011006 -
Trre1g00581 1004 FunFam Histidine kinase 5 217 352 - -
Trre1g00581 1004 Coils Coil 192 212 - -
Trre1g00581 1004 MobiDBLite consensus disorder prediction 769 789 - -
Trre1g00581 1004 CDD REC_hyHK_CKI1_RcsC-like 862 999 - -
Trre1g00581 1004 Pfam Response regulator receiver domain 862 930 IPR001789 GO:0000160
Trre1g00581 1004 Coils Coil 93 127 - -
Trre1g00581 1004 Gene3D - 441 685 IPR036890 -
Trre1g00581 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 429 679 IPR036890 -
Trre1g00581 1004 MobiDBLite consensus disorder prediction 769 852 - -
Trre1g00581 1004 FunFam Putative histidine kinase 5 363 440 - -
Trre1g00581 1004 Gene3D - 854 1004 - -
Trre1g00581 1004 SMART HisKA_10 375 440 IPR003661 GO:0000155|GO:0007165
Trre1g00581 1004 FunFam Probable histidine kinase 1 568 683 - -
Trre1g00581 1004 MobiDBLite consensus disorder prediction 790 804 - -
Trre1g00581 1004 Gene3D PAS domain 216 352 - -
Trre1g00581 1004 SMART REC_2 860 999 IPR001789 GO:0000160
Trre1g00581 1004 Pfam His Kinase A (phospho-acceptor) domain 377 440 IPR003661 GO:0000155|GO:0007165
Trre1g00581 1004 Gene3D - 363 440 - -
Trre1g00581 1004 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Trre1g00581 1004 PRINTS Bacterial sensor protein C-terminal signature 664 677 IPR004358 GO:0016310|GO:0016772
Trre1g00581 1004 PRINTS Bacterial sensor protein C-terminal signature 640 658 IPR004358 GO:0016310|GO:0016772
Trre1g00581 1004 CDD HATPase_EvgS-ArcB-TorS-like 491 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00581 Trre-Chr1 4426599 4431074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00581 1 1003 Histidine Kinase Gene Family AT5G10720 56.680 0.0 1074
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g00581 HATPase_c 2.8e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00581 - - cam:101512841 1722.21