Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00580 ATGTGGCCAGAAGATGTTGAAACTGATTTTGGGAAACAGTTCAGTATAGAAAAACCAGGAATGGATCAAGATATTTTGGAACAAGTAACAATCTTAGAGGAACCAATTGTAGCTGATTTTCAAAGAATTGTTGAGCTTACAAATTGTACAAAGCAAGGGTCTTTTCAATTAGCTAATCTCATGAAAAATTGGGAGTATAAGCAGGCGAATGCAGTTCGCCTTCTTCGAGAAGAGCTCGATAACCTTACCAAACAAAGGAAGGAAGTTGATTTTAGAAAGTTGGAGATACTTCGATTCGAGGAAGAAAGTTACAGCGGAAACAAATTTCCAGTTTCGATATTGGACGATGTTGTTCAAAACAAGAGAGTTGAAATTGAGGCCGAGTATGATACCGTTGTTTACTGGAAAAATCGGGCGATCGATTTGGAAAGACAGATGGAGGCAAGTATTCGGAGAGAGGTGATATTGAAGGAAAAATTGCAAGAAAGTATAGAGACTATTGAAAGACAATCCTCACCTGTGGAGGAACTGTCACAGATTCTTAAGAGAAAAGATAATTTCTTTCATTTTATACTTCAAAATGCACCTTTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGATTTATCTATAATTATTTTCCAAGTTTACAAGAGGAGGACATCATAGGGAAAACGGAGGATGAAATTTTCACCGGAACAGGTGTGAAGGAATTTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAATACCTGCAAAAAAAGAAATAACTTATGAGACACAACTATTTGGATCAAAGACATTTTTGATGTATGTAGAACCTGTGTTTAGTAAGGTGGGCGAAACAATTGGAGTAAACTATTTGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCTAAGCTAAGGGAAGAAATTGCAGTTGAAAAAGCCAGGGAAATGGAACTTAATAAAACTATTCACATTACAGAGGAGACAATGAGAGCAAAACAAATGCTGGCAACAATGTTTCATGAAATAAGATCTCCACTTTCTAGTGTTGTTAGCATGGCTAAAATTCTTACTACCACAAAACTTGATAGGGAGCATAGACAACTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATAATATACTTGATCTTTCCAAGGTTGAGTCGGGAGCTATTAAATTGGAAGCTACGAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTACTCCAGACAGCTGCAACAATATCATTGCAGAAAATGTTAACATTGGAAGGAAATATAGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGACTAAGCAGATTCTAACAAATTTTTACAATGCGGTCAAGTTTACACATCAAGGCAAAGTCGGTATAAACCTTTATGTTATTCCAGAGCCACCATTTTCAGTTAACAGTGAAAGCTCAATCAACGACGATACTGAGGACGAAACTCGTTCAACCGAAACAACAGTGTGGATACGTTGCGATGTATACGACACAGGAATTGGCATACCAGAAAAGGCTATACCTACTTTATTTAGAAAAGACCATACTCAAAAATATGGAGGCAAAGGTCTAGGACTAGCAATATGTAAACAACTGGTTGAGTTAATGGGGGGTAATTTAACAGTTACTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTACCATACAAAGTATCTACAACTTGTGATAATTCTGATGATCAAGATGAGCTTTCCGATGTCGATAACAACGATGATGACACAACCGAGGCCGAGGGGTTTTTCCAATTTCCTCCACAAACTTTGGGATCTCTTTTCACTTCTAATGGATCTACTGTGATGAGACCCTAA 1881 0.3732 MWPEDVETDFGKQFSIEKPGMDQDILEQVTILEEPIVADFQRIVELTNCTKQGSFQLANLMKNWEYKQANAVRLLREELDNLTKQRKEVDFRKLEILRFEEESYSGNKFPVSILDDVVQNKRVEIEAEYDTVVYWKNRAIDLERQMEASIRREVILKEKLQESIETIERQSSPVEELSQILKRKDNFFHFILQNAPFVIGHQDKELRYRFIYNYFPSLQEEDIIGKTEDEIFTGTGVKEFQDFKREVMEKGIPAKKEITYETQLFGSKTFLMYVEPVFSKVGETIGVNYLGMEITDQVRKRERMAKLREEIAVEKAREMELNKTIHITEETMRAKQMLATMFHEIRSPLSSVVSMAKILTTTKLDREHRQLLDVMISSGDLVLQLINNILDLSKVESGAIKLEATKFRPREVVRHVLQTAATISLQKMLTLEGNIADDIPIEVTGDVLRTKQILTNFYNAVKFTHQGKVGINLYVIPEPPFSVNSESSINDDTEDETRSTETTVWIRCDVYDTGIGIPEKAIPTLFRKDHTQKYGGKGLGLAICKQLVELMGGNLTVTSKEHCGSTFTFILPYKVSTTCDNSDDQDELSDVDNNDDDTTEAEGFFQFPPQTLGSLFTSNGSTVMRP 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00580 626 SMART HKATPase_4 445 575 IPR003594 -
Trre1g00580 626 ProSiteProfiles Histidine kinase domain profile. 340 575 IPR005467 -
Trre1g00580 626 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 91 573 - -
Trre1g00580 626 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 445 573 IPR003594 -
Trre1g00580 626 Coils Coil 72 92 - -
Trre1g00580 626 MobiDBLite consensus disorder prediction 583 599 - -
Trre1g00580 626 SMART HisKA_10 333 398 IPR003661 GO:0000155|GO:0007165
Trre1g00580 626 FunFam Putative histidine kinase 5 321 398 - -
Trre1g00580 626 MobiDBLite consensus disorder prediction 581 604 - -
Trre1g00580 626 Pfam His Kinase A (phospho-acceptor) domain 335 398 IPR003661 GO:0000155|GO:0007165
Trre1g00580 626 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 330 398 IPR036097 GO:0000155|GO:0007165
Trre1g00580 626 Coils Coil 304 324 - -
Trre1g00580 626 CDD HisKA 332 394 IPR003661 GO:0000155|GO:0007165
Trre1g00580 626 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 387 574 IPR036890 -
Trre1g00580 626 Gene3D - 399 580 IPR036890 -
Trre1g00580 626 PRINTS Bacterial sensor protein C-terminal signature 535 553 IPR004358 GO:0016310|GO:0016772
Trre1g00580 626 PRINTS Bacterial sensor protein C-terminal signature 559 572 IPR004358 GO:0016310|GO:0016772
Trre1g00580 626 PRINTS Bacterial sensor protein C-terminal signature 506 520 IPR004358 GO:0016310|GO:0016772
Trre1g00580 626 Gene3D PAS domain 175 310 - -
Trre1g00580 626 Coils Coil 150 170 - -
Trre1g00580 626 Gene3D - 322 398 - -
Trre1g00580 626 FunFam Histidine kinase 5 175 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00580 Trre-Chr1 4410784 4414339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00580 1 623 Histidine Kinase Gene Family AT5G10720 63.328 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00580 - - tpra:123916259 1072.77