Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00569 ATGAACACCCACATGATTGATTCCAACATTCCTACTAGTGGTATCAATGTCACCCCAAATGATCACAACATATCATGTTCCAACAATAAATTATACAAAGGGGTGAGGAAAAGAAAATGGGGGAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATATGGTTAGGATCATATGATACACAAGAAAAAGCTGCAAGAGCATTTGATGCAGCTCTTTATTGTCTACGTGGTCGCCATGCTAGTTTCAATTTTCCTAATACACCTCTTACCATCAATGTAGCTGTTCATCATGGTGTTGATCACAAATCTCTTTCACATCAAGAGATTCAAGAGATTGCTGCCAAGTTTGCCAATGAGTACTCATCATCACCAATTGAGCTAAGTAGTACTCAAGAAGAAGAAGAAGAAGATCAACACGTACCATTAGTAGAGTCACAAAATGATGCCAATTCAAGTTCTAATTCTAATTATGATTCCTACTCATTGTGTCCTCTTGATGATAATGAGGGTGATATGAGGAGGATGGATTGGACATTTGAGGACATGTTGGATAATATGAATGGAGGTGCTAATTTTGGCCTCAATTACTATGGGCAAGAAAATATGCAATACTCAAGTGAGTTACAATATTCCACACAATCTTTTGAGGAACATAATGTGGACCAAAATGAATGTGAAGATGCTTTTTCAAATCATTCATTTCTTTGGAGTTGGAATTTTTGA 732 0.3689 MNTHMIDSNIPTSGINVTPNDHNISCSNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRHASFNFPNTPLTINVAVHHGVDHKSLSHQEIQEIAAKFANEYSSSPIELSSTQEEEEEDQHVPLVESQNDANSSSNSNYDSYSLCPLDDNEGDMRRMDWTFEDMLDNMNGGANFGLNYYGQENMQYSSELQYSTQSFEEHNVDQNECEDAFSNHSFLWSWNF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00569 243 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Trre1g00569 243 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Trre1g00569 243 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Trre1g00569 243 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Trre1g00569 243 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Trre1g00569 243 MobiDBLite consensus disorder prediction 126 163 - -
Trre1g00569 243 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Trre1g00569 243 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Trre1g00569 243 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Trre1g00569 243 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Trre1g00569 243 MobiDBLite consensus disorder prediction 146 163 - -
Trre1g00569 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00569 Trre-Chr1 4326954 4327685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00569 32 191 AP2-EREBP Transcription Factor Family AT1G74930 51.250 2.05e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g00569 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00569 - - mtr:25481977 295.819