Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00561 ATGTCTTCTCATGGTAGCAAAAAACTACATACAAACATCGTTATGGTGGCTGTAGACAAAGACAAGAATAGTCGTTATGCCTATCGTTGGACAATTAATAATATTGAAAACCCTATCATCATTGCAGTTCATGTTAAACACAAAGACATTCCTCATCAGGGCACCAATGTTTTCCCCCCTGATGAAGAGGATGTAGACAATGTGTTCAGTCCCTTGCGTGAAATGTGTAATGATAAAGTAGTAAAGATGAAAGAAGCTGTAGTCGATGATAGTGATATTGCTAGAGGAATTTTGGATTATGCAAAGAGAAATCACATTCAAACTATCATTGTTGGTGCACCTTCAAGCTACACAAAAAATGTTCTATCAAGATCTCTAAACATGAGGACTATAAGCAAAAGGTTTAAAGGATATGAGGATATAGCAACATCAATAATGAAATCAGCTCCAGATTATAGTTCTGTCTATGTAATTGCAAAAGGAAAGGTAGTGGAAACTCGACCAGCAGTAAGCCCATTGGATAATTTAGATGTAAAATCACCTGGAATGTCAGCTTGTAAATCTGACAATGATATAAGGGCACCAACATTTAAAAGAGGATCTAGCACTAATAGTAGATCACGAAGAGCACTACTATTGGTTTCAACTAATCAATCTTTGGAGAGCATTGATTTATCAACTCATCATAGCCAAAAGTCACAATTATTTAGCAAAAACTCAAGCTTAAATGAAAATGACTCATCTGGGTCACATAAATTTGGTTTATTGGCTTTACCAAAATTAGAAAGGGATTCAAGCATTGAAGCAGATTCTCAACACTTGGGAGATATGGAAGCTGAGATGAAAGAATTGAGACTCAAACTTAGGAAGACTATGAACATGTACAAGTCAGCTTGCAAAGAAGCAATTACTGCCCAAAACAAGGCTAAAGAGATTAATCAATGGAAACTTGAAGAAGCACGTATTGTTGAAGAAGTTATGATGTCAAAAGAAGCAGCATTAGCAATGGCAGAAAAGGAAAAAGCTAAAGCAAAAGCTGCAATTCAAGAAGCTGATGAAGCTATGAAAATGGCAGAAAAAGAAGCACAAAGAAGATTAAAGGCAGAGAGAAAGGCTAGAAGAGAAATGGAAGAGAAAGATCAAGCACTAAATGTGATAGCTCGTAAAGATATTCGATACAGACAATACACCTTAGAAGAAATTGAAAATGCTACTCAAAATTTCTCATTATCAATGAAAATTGGTGAAGGTGGATATGGACCTGTTTTTAAAGGTCAACTTGATCATACAAATGTTGCTATCAAAGTTTTAAGACCTGATGCTAATCAGGGTAGAAAACAGTTCCTACAAGAGGTTGAGGTATTATGCAACATAAGACATCCAAATATGGTCCTCCTCCTAGGTGCATGTCAAGAATATGGATGCTTAGTATATGAATACATGGACAATGGTAGCCTAGAAGACAGATTATTAAGAAAACAAAATAGCCCTCCAATTCCATGGCAAAATCGTTTCGAAATAGCTTATGAAATTGCAACAGCACTTCTTTTCCTTCACCAAACAAAGCCAGAAGCCATTGTTCATAGAGACCTTAAACCAGCCAACATTCTTTTAGACAAAAATTTTGTTAGCAAAATAAGTGATGTTGGTTTATCAAGATTAGTACCACCTTGTGTAGCAGATTCTGTCACACAATATCACATGACTTCAGCAGCTGGAACATTATCTTACATTGATCCTGAGTATCAAAAAACAGGAAAATTAACAACAAAATCGGATATTTACTCTTTAGGGATAGTGTTTCTTCAAATTATCACAGCTAAACCTCCAATGGGACTTTCTCATCATGTTAAAAGGGCTATTGATAACGGAACATTTTTCGATATGCTTGATCCTGTTGTTACTGATTGGCCTATTGATGAAGTTTTGGTATTTGCTAAACTTGCTTTGAGTTGTGCTGAACTTAGTAAGAAAGATAGACCTGATCTTGCATTAGAAGTGATTCCGGAGCTTAATCGATTAAAAGAGTTTGGATGTAAGTCGCAAAAATATCAACAGAATCGGGGTCATGCACTGCGGCCTCCTACGCTTCCTCGAGGTTCATTTTGA 2109 0.3613 MSSHGSKKLHTNIVMVAVDKDKNSRYAYRWTINNIENPIIIAVHVKHKDIPHQGTNVFPPDEEDVDNVFSPLREMCNDKVVKMKEAVVDDSDIARGILDYAKRNHIQTIIVGAPSSYTKNVLSRSLNMRTISKRFKGYEDIATSIMKSAPDYSSVYVIAKGKVVETRPAVSPLDNLDVKSPGMSACKSDNDIRAPTFKRGSSTNSRSRRALLLVSTNQSLESIDLSTHHSQKSQLFSKNSSLNENDSSGSHKFGLLALPKLERDSSIEADSQHLGDMEAEMKELRLKLRKTMNMYKSACKEAITAQNKAKEINQWKLEEARIVEEVMMSKEAALAMAEKEKAKAKAAIQEADEAMKMAEKEAQRRLKAERKARREMEEKDQALNVIARKDIRYRQYTLEEIENATQNFSLSMKIGEGGYGPVFKGQLDHTNVAIKVLRPDANQGRKQFLQEVEVLCNIRHPNMVLLLGACQEYGCLVYEYMDNGSLEDRLLRKQNSPPIPWQNRFEIAYEIATALLFLHQTKPEAIVHRDLKPANILLDKNFVSKISDVGLSRLVPPCVADSVTQYHMTSAAGTLSYIDPEYQKTGKLTTKSDIYSLGIVFLQIITAKPPMGLSHHVKRAIDNGTFFDMLDPVVTDWPIDEVLVFAKLALSCAELSKKDRPDLALEVIPELNRLKEFGCKSQKYQQNRGHALRPPTLPRGSF 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00561 702 Pfam Protein kinase domain 410 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00561 702 ProSiteProfiles Protein kinase domain profile. 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00561 702 Gene3D Transferase(Phosphotransferase) domain 1 481 691 - -
Trre1g00561 702 MobiDBLite consensus disorder prediction 181 205 - -
Trre1g00561 702 PANTHER OS02G0152300 PROTEIN 14 684 - -
Trre1g00561 702 Gene3D HUPs 2 129 IPR014729 -
Trre1g00561 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Trre1g00561 702 Coils Coil 327 379 - -
Trre1g00561 702 Gene3D Phosphorylase Kinase; domain 1 385 480 - -
Trre1g00561 702 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 381 480 - -
Trre1g00561 702 Pfam Universal stress protein family 13 115 IPR006016 -
Trre1g00561 702 Coils Coil 267 294 - -
Trre1g00561 702 SMART serkin_6 408 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00561 702 SUPERFAMILY Protein kinase-like (PK-like) 390 663 IPR011009 -
Trre1g00561 702 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00561 Trre-Chr1 4260880 4265294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00561 83 678 Receptor kinase-like Gene Family AT5G12000 55.502 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre1g00561 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00561 - - gmx:100786386 811.986