Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00555 ATGACAGAGAGAAATCCAATAGCAGCAAATTCATCATCACCTGACAGTGATTTTAGCAACCAGTGGTGTTTGGAACTCTCTGACTACATGAATTTAGATGATCATAACCAATGGTTCCAAATTGATCCTACAACTGATCAGTCTTTTGTTTATCAAGCTAATGAAGCAGGTGACAGCCACATTAATGAAGGGTCTTCTAGTTCTACAAGAGATACTAATACCACTACTATGAGTGTTAAAGAGAGAGTTGCATTCAAAACAAAATCAGAGATTGAAGTACTTGATGATGGTTATAGATGGAGGAAGTATGGAAAGAAGATGGTCAAGAACAGCCCCAATCCAAGGAACTATTATAGGTGTTCAGTGGAGGGATGTCCCGTCAAAAAGAGAGTTGAAAGAGATAAAGATGATCCAAAGTATGTGATAACAACCTATGAAGGCATGCACACCCACCCAAATTCTTGCTAG 468 0.3868 MTERNPIAANSSSPDSDFSNQWCLELSDYMNLDDHNQWFQIDPTTDQSFVYQANEAGDSHINEGSSSSTRDTNTTTMSVKERVAFKTKSEIEVLDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKDDPKYVITTYEGMHTHPNSC 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00555 155 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 152 IPR044810 GO:0003700
Trre1g00555 155 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00555 155 SMART WRKY_cls 94 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00555 155 MobiDBLite consensus disorder prediction 57 76 - -
Trre1g00555 155 Gene3D WRKY domain 81 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g00555 155 FunFam WRKY transcription factor 57 80 154 - -
Trre1g00555 155 ProSiteProfiles WRKY domain profile. 89 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00555 155 SUPERFAMILY WRKY DNA-binding domain 87 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00555 Trre-Chr1 4198557 4199623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00555 82 151 WRKY Transcription Factor Family AT5G26170 82.857 7.20e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g00555 WRKY 6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00555 - - gmx:100796836 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00555 1 4198557 4199623 Trre1g00555 1 4198557 4199623 ECH