Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00552 ATGGACGGAGTTGATGTTCCTTACAATCCTCGTACTGTCGAAGAAGTCTTTCGTGATTTCAAAGGTCGCAGAGCTGCCTTAATCAATGCCCTCACCATTGATGTCGAAGAATTCTACCAGCAGTGTGATCCCGAGAAGGAAAACCTTTGCCTTTATGGATTTCCGAGTGAGCAGTGGGAGGTCAATCTGCCAGCTGAGGAAGTGCCGCCTGAGCTTCCAGAGCCTGCACTGGGTATCAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTCTCTTTGGTTGCTGTACACAGCGATGCTTGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGATTTGGATTCGACAAAGCTGACAGGAAACGACTATTTAATATGATAAATGATCTTCCAACAATCTTTGAAGCTGTTACAGGGTTGGCCAAGAAACAAGGAAAGGAAAAATCAGTTTCTAATAATAGCAGTACCAAATCCAAATCAAACACCAAGCGAGGTTCTGAAGCTCAGCCAAAGTATTCAAAACCAATGGCAATGCAAATGCAATCAAATGAAGATGATGAGGATGGTCTCGGTGTGGACGAGGAAGATGATGAGGAAGAACATGGAGATGCATCGTGTGGGGCATGTGGAGAAAGCTATGCAAATGATGAGTTTTGGATTTGCTGCGACATATGTGAGAAGTGGTTTCATGGAAAATGCGTGAAGATTACTCCGGCAAGGGCTGAGCATATCAAACAATACAAATGTCCAGCTTGCAGCAAGAGAGCTCGCACTTGA 780 0.4423 MDGVDVPYNPRTVEEVFRDFKGRRAALINALTIDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEAVTGLAKKQGKEKSVSNNSSTKSKSNTKRGSEAQPKYSKPMAMQMQSNEDDEDGLGVDEEDDEEEHGDASCGACGESYANDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSKRART 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00552 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 255 IPR013083 -
Trre1g00552 259 ProSitePatterns Zinc finger PHD-type signature. 207 253 IPR019786 -
Trre1g00552 259 MobiDBLite consensus disorder prediction 146 204 - -
Trre1g00552 259 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Trre1g00552 259 ProSiteProfiles Zinc finger PHD-type profile. 204 256 IPR019787 -
Trre1g00552 259 SMART PHD_3 206 254 IPR001965 -
Trre1g00552 259 FunFam PHD finger alfin-like protein 198 255 - -
Trre1g00552 259 SUPERFAMILY FYVE/PHD zinc finger 195 256 IPR011011 -
Trre1g00552 259 Pfam PHD-finger 207 255 IPR019787 -
Trre1g00552 259 MobiDBLite consensus disorder prediction 187 203 - -
Trre1g00552 259 PANTHER CPG BINDING PROTEIN 9 258 IPR045104 GO:0006355|GO:0042393
Trre1g00552 259 MobiDBLite consensus disorder prediction 146 169 - -
Trre1g00552 259 CDD PHD_AL_plant 207 256 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00552 Trre-Chr1 4169873 4173185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00552 1 258 Alfin-like Transcription Factor Family AT3G42790 69.231 4.28e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre1g00552 Alfin 4.6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00552 K26274 - vvi:100247536 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00552 1 4169873 4173185 Trre1g00552 1 4169873 4173185 ECH