Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g00547 | ATGGGGTGGGGTCACCTTCGAAGACATGGTTCAGATTCCAGTAACAACACCGATGCAGGTCCGAGCACCAGCACGGCGGTACCACGCCATTTTCCTCCGGCTGCTCAACCGGAAATGATGCGAGCAGCTGAAAAAGACGATCAATACGCCTCTTTCGTTTACGAAGCTTGTCGCGACGCCTTCCGCCACCTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAACTTTTAGGGCAAATGCTTTACTATGTTCTTACAACAGGCTCTGGACAACAAACACTTGGTGAGGAATACTGTGATATCACTCAGGTTGCTGGAACTTATAGACTTCCTCCTACACCGGCCAGGCGTGCTTTGTTCATTGTATACCAGTCGGCGATTCCGTACATTGCAGAACGAATTAGTTCTAGAATTGCTTCCCGGGGCATTATCCTTGCTGACTACGAGTCTGCTGAGAGTTATTATGGTGAAAATGCTCGCAGAAGTAGTAGTTCTCGGGTTTATGCCGCGAGTGAACTTTCTCCTTCGTCTACCTCAGGGCAGTCTACTTCAACTCTGACGAGGTTGAAGGAGAAACTCAGTGGATTTTGGTTGCATATGATTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGTTGCTTCTTCGTGCTAACCTCATGTTGTTTTACTTCGAAGGTCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATAGGAAAAGCATCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTCTTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTGCGTCGAAGAAATTTGACATCACTAGCTGGTTCAGTTCATCAAGCATCCTTTGCAACCGACCATACATCAGCAGGACATGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATCTCAAGAAGCTGACAATGGAAGTTGGGTCTCTGGATCTTCATCTTCTGAGCAGCATGCATCTAGTGGGGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTCTGGTTTGTATTTATCATTCAGACTTCTAG | 1197 | 0.4603 | MGWGHLRRHGSDSSNNTDAGPSTSTAVPRHFPPAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYRLPPTPARRALFIVYQSAIPYIAERISSRIASRGIILADYESAESYYGENARRSSSSRVYAASELSPSSTSGQSTSTLTRLKEKLSGFWLHMIQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNLTSLAGSVHQASFATDHTSAGHGLPVLNEEGNLASQEADNGSWVSGSSSSEQHASSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF | 398 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g00547 | 398 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 317 | 395 | IPR013083 | - | |
Trre1g00547 | 398 | FunFam | Peroxisome biogenesis factor 10 | 319 | 395 | - | - | |
Trre1g00547 | 398 | CDD | RING-HC_PEX10 | 342 | 393 | - | - | |
Trre1g00547 | 398 | Pfam | Pex2 / Pex12 amino terminal region | 46 | 281 | IPR006845 | - | |
Trre1g00547 | 398 | Pfam | Zinc finger, C3HC4 type (RING finger) | 343 | 387 | - | - | |
Trre1g00547 | 398 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
Trre1g00547 | 398 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Trre1g00547 | 398 | SUPERFAMILY | RING/U-box | 343 | 387 | - | - | |
Trre1g00547 | 398 | PANTHER | PEROXISOME ASSEMBLY PROTEIN 10 | 32 | 396 | IPR025654 | GO:0005778|GO:0007031|GO:0008270|GO:0016558 | |
Trre1g00547 | 398 | ProSitePatterns | Zinc finger RING-type signature. | 359 | 368 | IPR017907 | - | |
Trre1g00547 | 398 | ProSiteProfiles | Zinc finger RING-type profile. | 344 | 382 | IPR001841 | - | |
Trre1g00547 | 398 | SMART | ring_2 | 344 | 381 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g00547 | Trre-Chr1 | 4120615 | 4126225 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g00547 | 338 | 394 | C3H Transcription Factor Family | AT4G28270 | 34.247 | 1.64e-10 | 58.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g00547 | K13346 | - | gmx:100783914 | 662.914 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre1g00547 | 1 | 4120615 | 4126225 | Trre1g00547 | 1 | 4120615 | 4126225 | ECH |