Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00547 ATGGGGTGGGGTCACCTTCGAAGACATGGTTCAGATTCCAGTAACAACACCGATGCAGGTCCGAGCACCAGCACGGCGGTACCACGCCATTTTCCTCCGGCTGCTCAACCGGAAATGATGCGAGCAGCTGAAAAAGACGATCAATACGCCTCTTTCGTTTACGAAGCTTGTCGCGACGCCTTCCGCCACCTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAACTTTTAGGGCAAATGCTTTACTATGTTCTTACAACAGGCTCTGGACAACAAACACTTGGTGAGGAATACTGTGATATCACTCAGGTTGCTGGAACTTATAGACTTCCTCCTACACCGGCCAGGCGTGCTTTGTTCATTGTATACCAGTCGGCGATTCCGTACATTGCAGAACGAATTAGTTCTAGAATTGCTTCCCGGGGCATTATCCTTGCTGACTACGAGTCTGCTGAGAGTTATTATGGTGAAAATGCTCGCAGAAGTAGTAGTTCTCGGGTTTATGCCGCGAGTGAACTTTCTCCTTCGTCTACCTCAGGGCAGTCTACTTCAACTCTGACGAGGTTGAAGGAGAAACTCAGTGGATTTTGGTTGCATATGATTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGTTGCTTCTTCGTGCTAACCTCATGTTGTTTTACTTCGAAGGTCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATAGGAAAAGCATCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTCTTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTGCGTCGAAGAAATTTGACATCACTAGCTGGTTCAGTTCATCAAGCATCCTTTGCAACCGACCATACATCAGCAGGACATGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATCTCAAGAAGCTGACAATGGAAGTTGGGTCTCTGGATCTTCATCTTCTGAGCAGCATGCATCTAGTGGGGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTCTGGTTTGTATTTATCATTCAGACTTCTAG 1197 0.4603 MGWGHLRRHGSDSSNNTDAGPSTSTAVPRHFPPAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYRLPPTPARRALFIVYQSAIPYIAERISSRIASRGIILADYESAESYYGENARRSSSSRVYAASELSPSSTSGQSTSTLTRLKEKLSGFWLHMIQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNLTSLAGSVHQASFATDHTSAGHGLPVLNEEGNLASQEADNGSWVSGSSSSEQHASSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF 398
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00547 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 395 IPR013083 -
Trre1g00547 398 FunFam Peroxisome biogenesis factor 10 319 395 - -
Trre1g00547 398 CDD RING-HC_PEX10 342 393 - -
Trre1g00547 398 Pfam Pex2 / Pex12 amino terminal region 46 281 IPR006845 -
Trre1g00547 398 Pfam Zinc finger, C3HC4 type (RING finger) 343 387 - -
Trre1g00547 398 MobiDBLite consensus disorder prediction 9 24 - -
Trre1g00547 398 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g00547 398 SUPERFAMILY RING/U-box 343 387 - -
Trre1g00547 398 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 396 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Trre1g00547 398 ProSitePatterns Zinc finger RING-type signature. 359 368 IPR017907 -
Trre1g00547 398 ProSiteProfiles Zinc finger RING-type profile. 344 382 IPR001841 -
Trre1g00547 398 SMART ring_2 344 381 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g00547 Trre-Chr1 4120615 4126225 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00547 338 394 C3H Transcription Factor Family AT4G28270 34.247 1.64e-10 58.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00547 K13346 - gmx:100783914 662.914
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00547 1 4120615 4126225 Trre1g00547 1 4120615 4126225 ECH