Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00542 ATGGCATTTCAATTTGGAGTATTCTTCTGTGTTCTTGCTTTGTTCATTTGTTTCAATGTCAATTCAGTTGATTCAGATGATGGGGCAACATTGTTAGAGATAAAGAAGTCATTCAGGGATGTGGATAATGTTCTATATGATTGGACAGACTCACCAACATCAGATTATTGTGCTTGGAGAGGGATTTCATGTGATAATGTTACCTTCAATGTTGTTGCACTCAATCTTTCAGGTCTGAATCTTGATGGCGAAATTTCACCTGCAATAGGGAACCTTGAGAGCTTGGTCTCTATTGATCTTAAAGAAAACCGGTTATCAGGTCAGATACCAGATGAGATCGGTGACTGTTCTTTGTTGAATAGCTTGGACTTGTCATTCAACGAAATAAGGGGGGATATACCATTTTCGATATCTAAGCTGAAACAACTGGAAAGTCTGATTTTGAAAAACAATCAGTTAATTGGACCGATTCCTTCAACATTGTCTCAGATTCCAAACTTGAAGATACTGGACCTAGCACAGAATAATCTTAGTGGTGAAATACCAAGGCTTATATACTGGAATGAAGTTCTGCAGTATCTGGGCTTGCGAGGAAACAACTTGGCCGGTTCACTATCTCCGGACATGTGCCAGTTAACTGGCCTGTGGTATTTTGATGTGAGAAACAATAGCTTGACAGGAAGTATTCCTGAAAACATAGGAAACTGTACCTCCTTCCAGGTCTTGGATTTATCGTACAACCAGTTAACCGGAGAGATTCCATTCAATATCGGGTTTCTGCAAATTGCAACCTTGTCATTGCAAGGGAATAAACTTTCTGGACATATTCCACCGGTGCTCGGTCTCATGCAAGCACTTGCTGTGTTGGACTTGAGTTGTAACATGTTAACTGGATCAATCCCTCCAATTTTGGGTAATTTGACCTACACAGAAAAATTGTACTTGCATGGAAACAAGCTGACGGGCTCCATCCCTCCAGAACTCGGAAATATGACAAAGCTTCACTATTTGGAACTGAATGATAATCTTTTAAGTGGACACATCCCTCTCGACCTTGGAAAGCTTACTGATCTATTTGACTTGAATGTTGCTAACAACAACCTTGAGGGGCCGATTCCCGGTAATTTAAGCTCATGTACAAACCTTAACAGCCTAAATGTGCATGGGAATAAGCTGAATGGAACCATACCGGCTACTTTTGAGAGCTTGGAGAGTATGACTTCTTTGAATCTCTCATCAAACAACCTCCAAGGCTCCATTCCGATTGAATTGTCTCGGATCGGTAATTTGGATACATTGGACATTTCAAACAATAATATAATTGGACCAATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGCTGAATCTCAGCAGAAACAACTTAACAGGACCTATTCCAGCAGAGTTTGGTAATCTTAAAAGTGTTATGGAAATTGATCTTTCTCATAACCAACTTTCTGACTTTATTCCTGTTGAACTTAGTCAACTTCAGAACATAGCATCATTGAGGCTTGAAAACAATGACTTAACTGGGGATGTAGAGTCACTTGTAAACTGTCTTAGTCTTTCTTTGCTGAATGTGTCGTATAACAAACTAGTTGGCCTTATTCCCACAAGCAACAACTTTACCAGGTTTTCGCCAGACAGTTTCTTTGGAAATCCTGGTCTTTGTGGTAATTGGTTGAATTTTCCATGTCACGGCTCTCATTCTTCGGAACGAGTTACATTATCTAAGGCGGCTATTCTGGGAATTACACTTGGTGCCCTTGTAATTCTTCTTATGATACTTCTGGCTGCTTTCCGACCACACCATCCATCTCCGTTTCCGGATGGATCACTCGACAAACCAGACAAATCAATTACTTTCTCTCCTCCAAAACTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGACGATATCATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAATTGGAAGTGGTGCATCGAGTACGGTTTATAAATGTGTTCTTAAAAATTGCAAGCCAGTTGCCATAAAGAGGCTCTATTCTCACTATCCACAATACTTGAAAGAATTTGAGACCGAGCTTGCAACCGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGCTACTCTTTGTCACCGTATGGCCACCTTCTCTTTTATGACTACATGGAAAACGGCAGTCTATGGGATCTTCTTCACGGACCTAGCAAGAAGAAGAAACTTGATTGGAATATGCGTCTAAAAATAGCACTCGGAGCAGCACAAGGGCTTGCATATTTACACCATGATTGCAGTCCTCGGATCATCCACAGGGATGTGAAATCGTCGAACATTTTACTGGACGCAGATTTTGAGCCGCATCTCACGGATTTTGGCATTGCCAAAAGTCTCTGCCCTACAAAGACCCATACTTCCACTTACATAATGGGCACAATTGGCTACATAGATCCTGAGTATGCCAGAACTTCCCGCCTCACTGAGAAATCTGATGTTTACAGCTACGGTATTGTTTTACTTGAATTGCTAACTGGAAGAAAAGCTGTTGACAATGAATCCAACCTCCATCATCTAATTCTGTCCAAGACAGCTAGCAATGCAGTAATGGAAACTGCCGATCCCGATATTACTGCCACATGCAAGGACCTTGGAGCAGTAAAAAAAGTTTTTCAGCTTGCTCTATTATGCACAAAGAGGCAACCAGCCGATAGGCCAACGATGCATGAAGTAGCGCGTGTATTAGGAAGTCTTGTGCCGTCAATCACACCACCAAAACAACTAACTCCTCCACAACCTGCATCTCATCCATCTGCCAAAGTTCCATGCTACATGGATGAGTATGCAAATCTCAAGACACCACACTTGGTGAACTGTCCTTCCATGAGCACCTCAGATGCACAACTCTTCCTCAAATTTGGAGAAGTAATCTCTCAGAACAGTGAATGA 2958 0.4148 MAFQFGVFFCVLALFICFNVNSVDSDDGATLLEIKKSFRDVDNVLYDWTDSPTSDYCAWRGISCDNVTFNVVALNLSGLNLDGEISPAIGNLESLVSIDLKENRLSGQIPDEIGDCSLLNSLDLSFNEIRGDIPFSISKLKQLESLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLAGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTSFQVLDLSYNQLTGEIPFNIGFLQIATLSLQGNKLSGHIPPVLGLMQALAVLDLSCNMLTGSIPPILGNLTYTEKLYLHGNKLTGSIPPELGNMTKLHYLELNDNLLSGHIPLDLGKLTDLFDLNVANNNLEGPIPGNLSSCTNLNSLNVHGNKLNGTIPATFESLESMTSLNLSSNNLQGSIPIELSRIGNLDTLDISNNNIIGPIPSSLGDLEHLLKLNLSRNNLTGPIPAEFGNLKSVMEIDLSHNQLSDFIPVELSQLQNIASLRLENNDLTGDVESLVNCLSLSLLNVSYNKLVGLIPTSNNFTRFSPDSFFGNPGLCGNWLNFPCHGSHSSERVTLSKAAILGITLGALVILLMILLAAFRPHHPSPFPDGSLDKPDKSITFSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGSGASSTVYKCVLKNCKPVAIKRLYSHYPQYLKEFETELATVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPSKKKKLDWNMRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPTKTHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTASNAVMETADPDITATCKDLGAVKKVFQLALLCTKRQPADRPTMHEVARVLGSLVPSITPPKQLTPPQPASHPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00542 985 ProSiteProfiles Protein kinase domain profile. 652 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00542 985 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 728 929 - -
Trre1g00542 985 SMART LRR_typ_2 92 116 IPR003591 -
Trre1g00542 985 SMART LRR_typ_2 475 499 IPR003591 -
Trre1g00542 985 SMART LRR_typ_2 212 236 IPR003591 -
Trre1g00542 985 SMART LRR_typ_2 403 427 IPR003591 -
Trre1g00542 985 SMART LRR_typ_2 164 188 IPR003591 -
Trre1g00542 985 SMART LRR_typ_2 283 307 IPR003591 -
Trre1g00542 985 SMART LRR_typ_2 451 474 IPR003591 -
Trre1g00542 985 SMART LRR_typ_2 331 355 IPR003591 -
Trre1g00542 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 188 - -
Trre1g00542 985 ProSitePatterns Protein kinases ATP-binding region signature. 658 680 IPR017441 GO:0005524
Trre1g00542 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 299 571 - -
Trre1g00542 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 163 918 - -
Trre1g00542 985 Pfam Protein kinase domain 655 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00542 985 Gene3D Ribonuclease Inhibitor 444 570 IPR032675 -
Trre1g00542 985 Gene3D Ribonuclease Inhibitor 262 348 IPR032675 -
Trre1g00542 985 Gene3D Ribonuclease Inhibitor 349 443 IPR032675 -
Trre1g00542 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Trre1g00542 985 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Trre1g00542 985 CDD STKc_IRAK 658 921 - -
Trre1g00542 985 SMART serkin_6 652 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00542 985 Gene3D Phosphorylase Kinase; domain 1 624 727 - -
Trre1g00542 985 Gene3D Transferase(Phosphotransferase) domain 1 728 926 - -
Trre1g00542 985 Gene3D Ribonuclease Inhibitor 24 187 IPR032675 -
Trre1g00542 985 SUPERFAMILY L domain-like 49 260 - -
Trre1g00542 985 SUPERFAMILY Protein kinase-like (PK-like) 630 918 IPR011009 -
Trre1g00542 985 ProSiteProfiles Leucine-rich repeat profile. 166 188 IPR001611 GO:0005515
Trre1g00542 985 Pfam Leucine rich repeat 380 440 IPR001611 GO:0005515
Trre1g00542 985 Pfam Leucine rich repeat 453 512 IPR001611 GO:0005515
Trre1g00542 985 SUPERFAMILY RNI-like 205 539 - -
Trre1g00542 985 Gene3D Ribonuclease Inhibitor 188 261 IPR032675 -
Trre1g00542 985 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 623 727 - -
Trre1g00542 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 189 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00542 Trre-Chr1 4053187 4059792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00542 94 984 Receptor kinase-like Gene Family AT5G07180 64.798 0.0 1127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Trre1g00542 Pkinase 8.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00542 K20718 - gmx:100782307 1727.22