Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00541 ATGAATGTACGCAAGGGTTCAACAGTTTGGGTTCCAGATAAGGAATTAGCTTGGATACCTGCTGAAGTAATCGATTCTGATGATAAATTTGTTCAGATTGTAACTGATTCTGGCAAGAAGGTTTCTGTTTCGAAGGAGAAATTGTGTCCGAGAGATGCGGATGAAGATGAGCTTGGTGGATTTGAAGATATGACGAGATTGACTTACTTGAATGAACCAGGAGTGTTGTATAATATTCGAAGGAGATATGCACTTAATGATATTTATACATATACAGGGAGCATTTTAATAGCTGTTAATCCCTTCACAAAGCTTCCTCATTTGTATGATAGTCATATGATGGAGCAGTATAAGGGAGCTCCATTGGGTGAGCTTAGCCCACATGTTTTTGCTGTTGCAGATGCATCTTATAGAGCAATGATGAATGAAGGTAAAAGTCAATCTATCTTGGTAAGCGGTGAAAGTGGTGCCGGCAAAACTGAGACAACAAAATTGATTATGCAATATCTTACGTTTGTTGGTGGCCGTACCGGTGGTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCACTTTTAGAGGCATTTGGCAATGCAAGGACTGTTAGGAATGACAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATAGAAATGGTAGAATATCTGGTGCTGCAATCAGAACTTACTTATTAGAAAGATCACGAGTTGTGCAGATAAAGGATCCCGAAAGAAATTATCACTGCTTCTATCAGTTGTGTGCCTCTGAAAGGGATGCAGAAGAGTATAAGTTAGGACATCCAAGTCATTTCCACTATTTAAATCAAAGTAAAATCTATGAACTAAACGGTGTAAGCAATGCTGAAGAATACATGAGGACGAGGAGGGCAATGGATATTGTCGGCATCAGTCACGGGGATCAGGAAGCCATATTTCGCGTCTTAGCTGCAATTTTGCACTTGGGAAATGTTGAATTTTCTCCTGGAAAAGAGCATGACTCATCAGCAATAAAGGATGAAAAATCAAGATTTCATATGCAGATGGCTGCCGATCTTTTCATGTGTGATGTAGACCTACTGCTGGCAACATTGTGTACTCGATCGATACAAACTCGAGAAGGAAATATTATCAAGGCCCTTGATTGTAATGCTGCTGTTGCTGGTCGGGATGCTTTGGCAAAAACTGTTTATGCTCGTTTATTTGATTGGCTTGTTGATAAGATCAATAGGTCTGTTGGACAAGATATCAATTCCCCGATGCAAATTGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGGATAATAGTTTTGAGCAATTCTGTATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAACGAGCATGTATTCAAGATGGAGCAAGAGGAGTATGGCAAAGAAGAAATTAACTGGAGTTACATTGAATTTGTGGACAACCAAGATGTTCTTGATTTGATTGAAAAGAAACCCATTGGTGTCATTGCTCTGTTGGATGAAGCTTGCATGTTTCCAAAATCAACACATGAAACATTCTCTACTAAGTTGTTTCAGCATTTCCGGTCTCACCCTAGGTTGCAAAAGGAAAAGTTTTCACAAACAGATTTTATAGTTTCTCATTATGCTGGAAAGGTCACTTATCATACAGATACCTTTTTGGATAAAAATCGTGACTATGTTGTTGTAGAACATTGTAATCTATTTTCTTCTTCAAATTGCCCTTTTGTGTCTGGTCTTTTCCCTTCGCTGCCAGAGGAATCTTCAAGATCATCATACAAGTTTTCTTCGGTGGCTACTAGATTTAAGCAACAACTGCAATCACTCATGGAGACCCTCAAGTCAACAGAGCCTCATTACATACGATGTGTGAAACCAAATTCATTGAATCGACCACAAATGTTTGAGAATGCGAGCATCATACACCAATTACGCTGTGGGGGTGTCCTTGAAGCTATTCGGATAAGTCTGGCAGGTTATCCCACTCGAAGAACATATTCAGAGTTTGTAGATCGGTATGGATTAATAGGCCCTGAGATTTTGGATGGAAGTTATTATGATGATAAAGCTGCAACTGAGAAAATTTTACATAAGCTCAAGCTTGATAATTTTCAGTTGGGCAGGACCAAAGTATTTCTCAGGGCTGGTCAAATTGGTGTTTTGGACTCCAAACGTACTGAGGTTTTGGACAACGCGGCTAAGTGTATTCAGTGCCAACTGAGGACATTTATTACACGCAGGCATTTCATTTCAGTTAGAGCAGCTGCAGTGTCTCTTCAGGCATGCTGCAGGGGATACATTGCCCAGAAGATGTATGCAGCTAAAAGGGAAACAGCAGCAGCTATCACAGTGCAAAAGTATATACGTATGTGGCTAACAAGGCATGCACACATGAAATTATATTCTTCTGCTATTATCATACAATCGCATGTTCGAGGTTTCATTACTCAACAAAGATTTTTACATGGAAAAGAACATAGAGCCGCTATATCTGTTCAGGCCTGTTGGAGGATGTACAAGGTTAGGTCAGCTTTCCAGCGATATCTTGCTTCAGTTGTGGCAATACAATGTCTATGGCGGTGTAGACAAGCAAAAAGGGAGTTCCGTAGACTTAAACAAGAGGCTAATGAAGCTGGTGCCCTCCGTCTGGCTAAAACTAAACTTGAAAAACAAATGGAAGAGCTCACATGGCGTTTGCACCTAGAAAAGAAAATAAGGGTTTCTAATGAAGAAGCCAAACAAAGAGAGAATTCTGCACTTCGAAAAATGTTAGAAGCTCTGAATCTTGAATTAGATGCGGCCAAATTGGCTACAATCAATGAGTGCAACAAGAATGCTGTTCTGCAAAATCAATTGGAATTGTCAGCCAAGGAAAAATCTGCTTTAAAGAGAGAGCTAGTTTCTGTGGATGAATTACGAAAGGAAAATGCTATGCTAAAGTTTGCACTGGATTCCTTTGAGAAAAAGTACACATCTTTAGAGCTTGAATATGTAAATGCTCAAAAAGGCCAAGACGAAACCATTGAGAAACTGAGGGGATTTGAACAGAAGTGCTCTCAGCTCGAGCAAAATGTGAAAAGCCTTGAGGAAAAGCTATTGAGTTTGGAGGATGAAAATCACGTGCTTCGTCAGAAAGCCTTAAGTGCTCCTCGAAAGAGTAATCGCCCGAATTTTGCAAAGTCGTTTTCAGAAAAATACTCAACTCCGATAGCCTCCCGCACTGAGCGAAAGCCCATATTTGAGACACCCACACCCACAAAAACTACTGCTACTTTTACGCCAAGCATGTCAGACTCTCATCGATCGAAGCCAACAGCAGAGAGGAACCAGGACAATTATGAATTCCTCTCTAGGTGTATCAAAGAGAATTTGGGATTCAAAAATGGTAAACCTATTGCAGCTCGCATCATATACAAATGTCTTCTTCACTGGCATGCTTTTGAATCTGAGCGCACAGCCATTTTTGATAATGTTATTGAAGGCATAAATGATGCTCTAAAGGTTAGGGAAGATGACATAGTCTTGCCATATTGGCTGTCCAATACTTCTGCTCTTCTATGCCTCTTACAGAGGAACTTACGTTCAAATGGCTTTTTAGCTACAAATGGTCAACGTTATACTGGATCGTCTGGCTTGACCAGCAGAACTGGGCATGGACCGAAATCTCCATTGAAGTTTATTGGATATGATGATGGTATGTCTCATGTGGAGGCAAGATATCCAGCTATACTTTTCAAGCAACAACTAACTGCATGTGTTGAGAAATTTTTTGGGCTTCTACGTGATAATTTGAAAAAGGAACTTTCACCACTTCTGCAATTATGTATTCAGACACCCAAAACAGGAAGAACACATGGTGGAAAATCATCTAGATCTCCTGTTGGCCTTTCTCAACAATCATCTGGTAGTCAGTGGAGCAACATTGTCAAATTTTTGGATTCACTCATGAGCAAACTTCGTGGAAATCATGTGCCATCCTTCTTCATTCGTAAACTAGTTACCCAAGTTTTTCACTTCATCAACATTACACTCTTCAACAGTCTTCTTTTACGTCGTGAATGTTGCACATTCTCCAATGGTGAATATATGAAATCTGGTCTCTCAGAGCTGGAGAAATGGATAGCCAATGCAAAGGAGATGTATGCAGGAACATCTTGGCACGAGTTGAATTATATAAGACAAGCTGTTGGGTTCTTGGTTATACATCAGAAGAGAAAAAAGTCATTGGAAGAGATTCGACAGGATCTTTGTCCGGCATTGACTGTCAGACAAATATATCGAATAAGTACTATGTACTGGGATGACAAGTATGGAACCCAGAGTGTGTCCAATGAGGTAGTTAGTGTAATGAGGGAAATTGTTAACAAGGACAATCAGAATATGCCCTCTAATTCTTTCCTATTGGATGATGATCTGAGCATTCCTTTCTCTGCCGAAGATGTAGATAAGGCAATCCCTCCTATAGATCTGGACGAGATTGATCTCCCAGTATTCGTGTCAGAATATTCTTGTGCCCAGTTTCTTAATCCACATCAAAATAGATTGGTCGTCACTGAAGCTTGA 4575 0.3976 MNVRKGSTVWVPDKELAWIPAEVIDSDDKFVQIVTDSGKKVSVSKEKLCPRDADEDELGGFEDMTRLTYLNEPGVLYNIRRRYALNDIYTYTGSILIAVNPFTKLPHLYDSHMMEQYKGAPLGELSPHVFAVADASYRAMMNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRTGGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDRNGRISGAAIRTYLLERSRVVQIKDPERNYHCFYQLCASERDAEEYKLGHPSHFHYLNQSKIYELNGVSNAEEYMRTRRAMDIVGISHGDQEAIFRVLAAILHLGNVEFSPGKEHDSSAIKDEKSRFHMQMAADLFMCDVDLLLATLCTRSIQTREGNIIKALDCNAAVAGRDALAKTVYARLFDWLVDKINRSVGQDINSPMQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYGKEEINWSYIEFVDNQDVLDLIEKKPIGVIALLDEACMFPKSTHETFSTKLFQHFRSHPRLQKEKFSQTDFIVSHYAGKVTYHTDTFLDKNRDYVVVEHCNLFSSSNCPFVSGLFPSLPEESSRSSYKFSSVATRFKQQLQSLMETLKSTEPHYIRCVKPNSLNRPQMFENASIIHQLRCGGVLEAIRISLAGYPTRRTYSEFVDRYGLIGPEILDGSYYDDKAATEKILHKLKLDNFQLGRTKVFLRAGQIGVLDSKRTEVLDNAAKCIQCQLRTFITRRHFISVRAAAVSLQACCRGYIAQKMYAAKRETAAAITVQKYIRMWLTRHAHMKLYSSAIIIQSHVRGFITQQRFLHGKEHRAAISVQACWRMYKVRSAFQRYLASVVAIQCLWRCRQAKREFRRLKQEANEAGALRLAKTKLEKQMEELTWRLHLEKKIRVSNEEAKQRENSALRKMLEALNLELDAAKLATINECNKNAVLQNQLELSAKEKSALKRELVSVDELRKENAMLKFALDSFEKKYTSLELEYVNAQKGQDETIEKLRGFEQKCSQLEQNVKSLEEKLLSLEDENHVLRQKALSAPRKSNRPNFAKSFSEKYSTPIASRTERKPIFETPTPTKTTATFTPSMSDSHRSKPTAERNQDNYEFLSRCIKENLGFKNGKPIAARIIYKCLLHWHAFESERTAIFDNVIEGINDALKVREDDIVLPYWLSNTSALLCLLQRNLRSNGFLATNGQRYTGSSGLTSRTGHGPKSPLKFIGYDDGMSHVEARYPAILFKQQLTACVEKFFGLLRDNLKKELSPLLQLCIQTPKTGRTHGGKSSRSPVGLSQQSSGSQWSNIVKFLDSLMSKLRGNHVPSFFIRKLVTQVFHFINITLFNSLLLRRECCTFSNGEYMKSGLSELEKWIANAKEMYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVSVMREIVNKDNQNMPSNSFLLDDDLSIPFSAEDVDKAIPPIDLDEIDLPVFVSEYSCAQFLNPHQNRLVVTEA 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00541 1524 Gene3D - 663 731 - -
Trre1g00541 1524 ProSiteProfiles IQ motif profile. 757 785 IPR000048 GO:0005515
Trre1g00541 1524 Pfam IQ calmodulin-binding motif 735 753 IPR000048 GO:0005515
Trre1g00541 1524 Pfam IQ calmodulin-binding motif 806 824 IPR000048 GO:0005515
Trre1g00541 1524 Pfam IQ calmodulin-binding motif 830 850 IPR000048 GO:0005515
Trre1g00541 1524 Pfam IQ calmodulin-binding motif 757 774 IPR000048 GO:0005515
Trre1g00541 1524 Pfam IQ calmodulin-binding motif 782 800 IPR000048 GO:0005515
Trre1g00541 1524 Coils Coil 865 895 - -
Trre1g00541 1524 Gene3D Kinesin motor domain 62 659 IPR036961 -
Trre1g00541 1524 Coils Coil 1008 1049 - -
Trre1g00541 1524 Gene3D - 435 620 - -
Trre1g00541 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 879 IPR027417 -
Trre1g00541 1524 Coils Coil 914 941 - -
Trre1g00541 1524 FunFam Myosin heavy chain 249 303 - -
Trre1g00541 1524 SMART DIL_2 1335 1442 IPR002710 -
Trre1g00541 1524 CDD MYSc_Myo11 73 718 IPR036018 -
Trre1g00541 1524 ProSiteProfiles IQ motif profile. 804 833 IPR000048 GO:0005515
Trre1g00541 1524 ProSiteProfiles IQ motif profile. 829 858 IPR000048 GO:0005515
Trre1g00541 1524 MobiDBLite consensus disorder prediction 1084 1104 - -
Trre1g00541 1524 ProSiteProfiles Dilute domain profile. 1160 1460 IPR002710 -
Trre1g00541 1524 ProSiteProfiles IQ motif profile. 854 881 IPR000048 GO:0005515
Trre1g00541 1524 CDD MyosinXI_CBD 1111 1483 IPR037975 GO:0007015
Trre1g00541 1524 Gene3D - 832 880 - -
Trre1g00541 1524 Gene3D - 783 831 - -
Trre1g00541 1524 Gene3D - 732 782 - -
Trre1g00541 1524 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Trre1g00541 1524 SMART MYSc_2a 53 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g00541 1524 ProSiteProfiles IQ motif profile. 781 807 IPR000048 GO:0005515
Trre1g00541 1524 MobiDBLite consensus disorder prediction 1284 1305 - -
Trre1g00541 1524 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre1g00541 1524 Pfam Myosin N-terminal SH3-like domain 6 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre1g00541 1524 SMART iq_5 803 825 IPR000048 GO:0005515
Trre1g00541 1524 SMART iq_5 828 850 IPR000048 GO:0005515
Trre1g00541 1524 SMART iq_5 851 873 IPR000048 GO:0005515
Trre1g00541 1524 SMART iq_5 732 754 IPR000048 GO:0005515
Trre1g00541 1524 SMART iq_5 755 777 IPR000048 GO:0005515
Trre1g00541 1524 SMART iq_5 780 802 IPR000048 GO:0005515
Trre1g00541 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 779 IPR027417 -
Trre1g00541 1524 Pfam DIL domain 1336 1439 IPR002710 -
Trre1g00541 1524 Gene3D - 249 306 - -
Trre1g00541 1524 MobiDBLite consensus disorder prediction 1084 1112 - -
Trre1g00541 1524 Pfam Myosin head (motor domain) 62 718 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g00541 1524 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g00541 1524 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g00541 1524 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g00541 1524 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g00541 1524 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g00541 1524 PANTHER MYOSIN 803 1449 - -
Trre1g00541 1524 Coils Coil 949 969 - -
Trre1g00541 1524 Coils Coil 973 993 - -
Trre1g00541 1524 ProSiteProfiles Myosin motor domain profile. 59 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00541 Trre-Chr1 4030351 4049342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00541 1 1512 Myosins gene family AT4G33200 71.646 0.0 2210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00541 K10357 - gmx:100790815 2610.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00541 1 4030351 4049342 Trre5g05057 5 51963300 51991400 PCT