Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00531 ATGGCTTTAATAGGTGGATTATTGGGTTATTTGTATAGGCCATTTTGGAGATTAAGGAAAGTTCCAGGCCCACCTTCTCTTCCTCTTGTAGGACATCTTCCATTACTAGCAAAGTATGGCCCGGATGTGTTCTCAATTCTTGCCAAACAATATGGCCCAATTTACAGATTTCATATGGGAAGACAACCTCTAATAATCATAGCAGATGCAGAGCTTTGTAAAGAGGTGGGAATAAGAAAATTCAAAGATATTCCAAATAGAAGCATTCCTTCTCCTATCTCTGCTTCTCCTCTTCACCAAAAAGGTTTATTCTTCACAAGGGACTCGCAATGGTCTACGATGAGAAATACCATATTGTCGGTATACCAACCATCACACTTAGCAAACTTAGTGCCAAAAATGCAATCATTTATAGAATCAGCAACACAAAATCTTGATGACACCTCAAATGAAGACATAATCTTTTCCAATCTTTCCCTAAGATTAGCAACAGATGTTATTGGAGATGCAGCATTTGGTGTCAACTTTGGTCTCTCAAATCCTCATTCAATTTGTGAATCAATTAAAAGTGTTAACAATAATGTAGAACATTCAAGTGCTAGTAGTAGTGATGAAGTATCTAATTTCATCAATCAACATATTTACTCCACAACACAACTTAAGATGGATTTGTCAGGTTCATTCTCAATTATAATTGGTTTAATTGCTCCTATACTTCAAGAACCATTTAGACAAATTTTAAAGAGAATAAAGGGCACTATGGATTGGAAAATGGAATGTACTAATAAAAATTTAACTGGTCGTCTTGAGGAGATTGTTAAGAAGAGAATGGAAGATAAGAATCGAACTTCGAAGAATTTTTTATCCCTTATATTGAATGCAAGAGAATCAAAGAGTGTGTCAGAGAGTGTGTTTTCATTTGACTACATAAGTGCTATAACTTATGAACACTTACTTGCCGGCTCGGCTACAACATCCTTTACACTGTCATCTATTGTCTATTTGGTTGCTGGTCACCTAAATGTTGAGCAAAAATTGCTTCAAGAGATTGATGGGTTTGGAACACATGATAGGATACCTAATGCTAAAGATCTTAATGAAAATTTTCCTTATCTTGATCAGGTGATTAAAGAGGCAATGAGGATTTACACTGTCTCTCCATTGGTTGCAAGAGAAACATCAAGTGAAGTAGAGATAGGAAGTTACCTTCTTCCAAAGGGAACATGGGTATGGTTAGCACTTGGAGTTCTAGCAAAAGACTCAAGGAACTTTGCAGAGCCAGAAAAATTCAAACCAGAGAGATTTGATCCTAAATGTGAAGAAATGAAAAGAAGGCACCCTTATGCATTCATACCATTTGGAATTGGTCCAAGAGCATGTATTGGCCAGAAATTTTCCATGCAAGAAATCAAGCTTACTTTGATTCATTTATATAGAAAATATGTATTTCGTCATTCACTTAATATGGAAAAACCTCTAGAACTTGAATATGGTATGGTTCTCAACTTCAAGCATGGTGTCAAGCTTAGAGTTATTAAAAGAACATAA 1548 0.3559 MALIGGLLGYLYRPFWRLRKVPGPPSLPLVGHLPLLAKYGPDVFSILAKQYGPIYRFHMGRQPLIIIADAELCKEVGIRKFKDIPNRSIPSPISASPLHQKGLFFTRDSQWSTMRNTILSVYQPSHLANLVPKMQSFIESATQNLDDTSNEDIIFSNLSLRLATDVIGDAAFGVNFGLSNPHSICESIKSVNNNVEHSSASSSDEVSNFINQHIYSTTQLKMDLSGSFSIIIGLIAPILQEPFRQILKRIKGTMDWKMECTNKNLTGRLEEIVKKRMEDKNRTSKNFLSLILNARESKSVSESVFSFDYISAITYEHLLAGSATTSFTLSSIVYLVAGHLNVEQKLLQEIDGFGTHDRIPNAKDLNENFPYLDQVIKEAMRIYTVSPLVARETSSEVEIGSYLLPKGTWVWLALGVLAKDSRNFAEPEKFKPERFDPKCEEMKRRHPYAFIPFGIGPRACIGQKFSMQEIKLTLIHLYRKYVFRHSLNMEKPLELEYGMVLNFKHGVKLRVIKRT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00531 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Trre1g00531 515 PANTHER THROMBOXANE-A SYNTHASE 5 514 - -
Trre1g00531 515 Gene3D Cytochrome P450 11 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 SUPERFAMILY Cytochrome P450 13 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS E-class P450 group I signature 48 67 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS E-class P450 group I signature 162 180 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00531 515 Pfam Cytochrome P450 22 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00531 Trre-Chr1 3947336 3950046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00531 59 514 Cytochrome P450 AT2G26170 71.491 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00531 K20771 - gmx:100805689 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00531 1 3947336 3950046 Trre5g05014 5 51706081 51712654 PCT