Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00530 ATGATGTTTATTAATGTAATTTCAAGTGTCCCTTTGTCATCAACATTAATATTCACATTGATGGCTTTAATAGGTGGATTATTGGGTTATTTGTATAGGCCATTTTGGAGATTAAGGAAAGTTCCAGGCCCACCTTCTCTTCCTCTTGTAGGACATCTTCCATTACTAGCAAAGTATGGCCCGGATGTGTTCTCAATTCTTGCCAAACAATATGGCCCAATTTACAGATTTCATATGGGAAGACAACCTCTAATAATCATAGCAGATGCAGAGCTTTGTAAAGAGGTGGGAATAAGAAAATTCAAAGATATTCCAAATAGAAGCATTCCTTCTCCTATCTCTGCTTCTCCTCTTCACCAAAAAGGTTTATTCTTCACAAGGGACTCGCAATGGTCTACGATGAGAAATACCATATTGTCGGTATACCAACCATCACACTTAGCAAACTTAGTGCCAAAAATGCAATCATTTATAGAATCAGCAACACAAAATCTTGATGACACCTCAAATGAAGACATAATCTTTTCCAATCTTTCCCTAAGATTAGCAACAGATGTTATTGGAGATGCAGCATTTGGTGTCAACTTTGGTCTCTCAAATCCTCATTCAATTTGTGAATCAATTAAAAGTGTTAACAATAATGTAGAACATTCAAGTGCTAGTAGTAGTGATGAAGTATCTAATTTCATCAATCAACATATTTACTCCACAACACAACTTAAGATGGATTTGTCAGGTTCATTCTCAATTATAATTGGTTTAATTGCTCCTATACTTCAAGAACCATTTAGACAAATTTTAAAGAGAATAAAGGGCACTATGGATTGGAAAATGGAATGTACTAATAAAAATTTAACTGGTCGTCTTGAGGAGATTGTTAAGAAGAGAATGGAAGATAAGAATCGAACTTCGAAGAATTTTTTATCCCTTATATTGAATGCAAGAGAATCAAAGAGTGTGTCAGAGAGTGTGTTTTCATTTGACTACATAAGTGCTATAACTTATGAACACTTACTTGCCGGCTCGGCTACAACATCCTTTACACTGTCATCTATTGTCTATTTGGTTGCTGGTCACCTAAATGTTGAGCAAAAATTGCTTCAAGAGATTGATGGGTTTGGAACACATGATAGGATACCTAATGCTAAAGATCTTAATGAAAATTTTCCTTATCTTGATCAGGTGATTAAAGAGGCAATGAGGATTTACACTGTCTCTCCATTGGTTGCAAGAGAAACATCAAGTGAAGTAGAGATAGGAAGTTACCTTCTTCCAAAGGGAACATGGGTATGGTTAGCACTTGGAGTTCTAGCAAAAGACTCAAGGAACTTTGCAGAGCCAGAAAAATTCAAACCAGAGAGATTTGATCCTAAATGTGAAGAAATGAAAAGAAGGCACCCTTATGCATTCATACCATTTGGAATTGGTCCAAGAGCATGTATTGGCCAGAAATTTTCCATGCAAGAAATCAAGCTTACTTTGATTCATTTATATAGAAAATATGTATTTCGTCATTCACTTAATATGGAAAAACCTCTAGAACTTGAATATGGTATGGTTCTCAACTTCAAGCATGGTGTCAAGCTTAGAGTTATTAAAAGAACATAA 1608 0.3526 MMFINVISSVPLSSTLIFTLMALIGGLLGYLYRPFWRLRKVPGPPSLPLVGHLPLLAKYGPDVFSILAKQYGPIYRFHMGRQPLIIIADAELCKEVGIRKFKDIPNRSIPSPISASPLHQKGLFFTRDSQWSTMRNTILSVYQPSHLANLVPKMQSFIESATQNLDDTSNEDIIFSNLSLRLATDVIGDAAFGVNFGLSNPHSICESIKSVNNNVEHSSASSSDEVSNFINQHIYSTTQLKMDLSGSFSIIIGLIAPILQEPFRQILKRIKGTMDWKMECTNKNLTGRLEEIVKKRMEDKNRTSKNFLSLILNARESKSVSESVFSFDYISAITYEHLLAGSATTSFTLSSIVYLVAGHLNVEQKLLQEIDGFGTHDRIPNAKDLNENFPYLDQVIKEAMRIYTVSPLVARETSSEVEIGSYLLPKGTWVWLALGVLAKDSRNFAEPEKFKPERFDPKCEEMKRRHPYAFIPFGIGPRACIGQKFSMQEIKLTLIHLYRKYVFRHSLNMEKPLELEYGMVLNFKHGVKLRVIKRT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00530 535 PRINTS P450 superfamily signature 394 405 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PRINTS P450 superfamily signature 471 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PRINTS P450 superfamily signature 340 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PRINTS P450 superfamily signature 480 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 473 482 IPR017972 GO:0005506|GO:0016705
Trre1g00530 535 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PRINTS E-class P450 group I signature 470 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PRINTS E-class P450 group I signature 480 503 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PRINTS E-class P450 group I signature 433 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PRINTS E-class P450 group I signature 329 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PRINTS E-class P450 group I signature 393 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 Pfam Cytochrome P450 42 518 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 PANTHER THROMBOXANE-A SYNTHASE 14 534 - -
Trre1g00530 535 Gene3D Cytochrome P450 31 535 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00530 535 SUPERFAMILY Cytochrome P450 33 534 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00530 Trre-Chr1 3947276 3950046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00530 79 534 Cytochrome P450 AT2G26170 71.491 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00530 K20771 - gmx:100805689 880.937