Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00525 ATGAATTCTCTGTCACTCCTCCACAACACAAATGCATCTCTCCACTTCCACTCCTTCATCCCCTCCAAACCCACCCTTTCCTTCATCTCCCTCAAACCAAAAACAATCCAATGCTCCAACAACAACAACAACAACATCATCGACATAGACATGGTCAAAACCAAACAAGGAACCTACGTACAAAAACAGAACAAAGTCGTAGTACTCTGGGACCTCGACAACAAACCTCCACGTGGACCACCCTACAACGCCGCACTCTCTCTCAAAACCCTCGCCGAAACTTTCGGACAACTCACCGACATCTCCGCTTACGCTAATCGCCACACTTTCATCCATCTCCCTCAATGGGTTCTCAACCAACGCCGAGAACGCAAAAACCTCGATTTCCTCGAACGCAAAGGTATCATTAATCCCTCCGAACCTTACTTATGTTCTGTTTGCGGTCGTAAATGTAAAACAAACATAGATCTTAAGAAACATTTTAAGCAACTTCATCTAAGAGAGAGACAGAAAAAGTTAAATCGTATGAATTCGTTGAAAGGGAAGAAGAGACAGAAGTATAAGGAAAGATTTGTTAGTGGTGATTCCAAGTATAATGACGCGGTTCGAGGGATTTTAAAGCCCAAAGTTGGTTATGGTTTAGCGTCCGAATTGCGGCGTGCTGGTGTTTTTGTTAAGACTGTTGAGGATAAACCTCAGGCTGCTGATTGGGCTTTGAAGAAAAGGATGATGTATTCTTTGGATAGAGGAGTTGATTGGTTGTTTTTGGTTTCTGATGATTCGGATTTTAGCGAGATGTTGAGGAGGGCTAAGGAGGCGAATTTGGGGACTGTTGTTGTTGGGGATGTTGATAGAGCTTTAGGGAGACATGCTGATATGTGGATTTCTTGGAATGATGTTGAGAATGGCGAGGTTACAGAAAAGGATTTGGTTCCGAGGAGTAGCGAAAGGAGGAGAAGAACTACAAATGCATCGACAACAACGACAATGGACGAGTTTGGTGATGTGTTGTTTTTTCATGACGGTGAGGAAATGGAAATGGGAGAAGATTTTATGTTGGAGTATAGCGACGATGAGGATTTTGATTTCGATTCTGATGATGATTCTGACCAAGAAGATGATGATGGGTTTTATATGTATTGA 1143 0.4269 MNSLSLLHNTNASLHFHSFIPSKPTLSFISLKPKTIQCSNNNNNNIIDIDMVKTKQGTYVQKQNKVVVLWDLDNKPPRGPPYNAALSLKTLAETFGQLTDISAYANRHTFIHLPQWVLNQRRERKNLDFLERKGIINPSEPYLCSVCGRKCKTNIDLKKHFKQLHLRERQKKLNRMNSLKGKKRQKYKERFVSGDSKYNDAVRGILKPKVGYGLASELRRAGVFVKTVEDKPQAADWALKKRMMYSLDRGVDWLFLVSDDSDFSEMLRRAKEANLGTVVVGDVDRALGRHADMWISWNDVENGEVTEKDLVPRSSERRRRTTNASTTTTMDEFGDVLFFHDGEEMEMGEDFMLEYSDDEDFDFDSDDDSDQEDDDGFYMY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00525 380 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Trre1g00525 380 Gene3D - 57 300 - -
Trre1g00525 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Trre1g00525 380 CDD PIN_LabA-like 152 282 - -
Trre1g00525 380 MobiDBLite consensus disorder prediction 358 380 - -
Trre1g00525 380 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 32 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00525 Trre-Chr1 3899607 3900749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00525 15 372 C2H2 Transcription Factor Family AT5G52010 56.430 3.75e-145 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g00525 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00525 - - tcc:18591156 453.366