Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00522 ATGGAGATGATGAAAGGTTTGTCGGTGAATGAAAATATGTCAAATTTGACATCTGCTTCAAGTGAAATAAGTGCTTCTAATTCAGCTACCAAGAATGGAAAAGCTTCAACAAATCTAGAACCACAAACCAAAAGGAAGAGAAATCTTCCTGGCCATCCAGATCCTGAGGCAGAAGTGATAGCTTTGAGTCCTCAAACTTTGTTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAGCTTCATAAAAGAGGACATAATTTACCATGGAAGTTAAAGAAAAGAAACAGCAAAGAAATCATAAGAAAGAAAGTATATGTTTGTCCAGAATCAACATGTGTTCATCATGAACCTTCAAGAGCACTTGTTCAATCTGATTGGAAAGCTCATTCAAAAATTTGTGGCACCAAAGAGTATAAGTGTGACTGTGGAACCCTTTTCTCAAGAAGGGACAGTTTCATCACTCATAGAGCATTCTGTGATGTTTTATCACAAGAGAGTGCTATATCAATTTCAGCAGTAAATCCTTTATTCTCTTCTCACTCTCAATTTAATCATCATAGCCATAATTTCCAACCACCATTCCTAAAAAAAGAACAAGACTTGAATATTTTAAGACCAGAAATAATACCATCATGGTTCCCTTCCTCAAGTACACAACAACAATTACTCCCTACTCATTTTAGCCATTATCATCAAAACCCTAACCCTACAACTTTATTTCATTCAAATTTCAACTCCAACAATATTATTACCTCTTCTCCTCACATGTCTGCCACTGCTTTACTGCAAAAAGCATCACATATTGGTGTAACAGTGAGTAAAACAGAACCTTGTATACCCCACTTAATGCAAACTCATCACGTGCCTTTTATGGCTTCTTCACGTGAAGAAATAGGGAATAGTACTACTGGTTTTTCTCATTGTTTGGCTTCATATGGAAATAAAGCTGTTACTAATACAGAACAAGAATCTTCTCTTTTGCATGATGTGATATTTGGTAGTAATGAGAATTCATCACAATTTGAAAGTGTTACTGCTGGTATGAATATGAGGGGAGGAATGTTTGATCCACAAATAGATAATAATAACTTTGAGGGACAATATTCCAATTTTGGTAAAAGCAACAACATTATGAAAGGTGGTGGTGGTGTCCATGCAATTAATGATGATGAAATGACAAGGGATTTTTTGAGTCTTGGTGCATTTTCACAAAGAGATGACTTGTTGTTTGGTATGAAATATACGGCCATTTAG 1284 0.3536 MEMMKGLSVNENMSNLTSASSEISASNSATKNGKASTNLEPQTKRKRNLPGHPDPEAEVIALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNSKEIIRKKVYVCPESTCVHHEPSRALVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESAISISAVNPLFSSHSQFNHHSHNFQPPFLKKEQDLNILRPEIIPSWFPSSSTQQQLLPTHFSHYHQNPNPTTLFHSNFNSNNIITSSPHMSATALLQKASHIGVTVSKTEPCIPHLMQTHHVPFMASSREEIGNSTTGFSHCLASYGNKAVTNTEQESSLLHDVIFGSNENSSQFESVTAGMNMRGGMFDPQIDNNNFEGQYSNFGKSNNIMKGGGGVHAINDDEMTRDFLSLGAFSQRDDLLFGMKYTAI 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00522 427 Gene3D Classic Zinc Finger 52 127 - -
Trre1g00522 427 MobiDBLite consensus disorder prediction 18 56 - -
Trre1g00522 427 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Trre1g00522 427 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Trre1g00522 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Trre1g00522 427 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 131 IPR031140 -
Trre1g00522 427 SUPERFAMILY beta-beta-alpha zinc fingers 72 166 IPR036236 -
Trre1g00522 427 MobiDBLite consensus disorder prediction 18 44 - -
Trre1g00522 427 FunFam protein indeterminate-domain 12-like 52 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00522 Trre-Chr1 3888741 3891709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00522 9 285 IDZ Gene Family AT1G55110 47.761 1.53e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g00522 zf-C2H2_jaz 4.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00522 K25870 - qsu:112016383 351.288