Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00512 ATGGGTGGGGTTTTTTGGCCCAAACCCGCCCTACCCAACCCATTACCCACCCCTAATGATGATGATGTGGAAGGTAGCATCCGGCATGTTGTTGTTTCGCAGGTATTGGAACTTGGAATAGTTTCACATTCCATGATAATTGGGTTATCACTAGGAGTCTCACAAAGTCCATGTACAATGAGACCTCTAATTGCAGCATTATCCTTTCACCAATTCTTTGAAGGATTTGCACTTGGTGGTTGCATATCAGAAGCTAAATTCAAGACATCATCAGCAACAATAATGTCATGTTTTTTTGCACTTACAACACCAATTGGTGTTGCAATTGGAACATGTATTGCCTCAAATTTCAATCCTTATAGTCCAGGAGCTCTTATTACAGAAGGTATCTTGGACTCTTTGTCAGCTGGAATTTTAGTGTATATGGCTTTGGTGGATTTAATAGCTGCTGATTTTCATAGTAAGCGAATGCGTTGTAGCTTTCGGCTTCAAATTATTTCTTTTTGTTTGCTTTTCATTGGGGCTGGATGTATGTCTTCTCTTGCACTTTGGGCATAA 558 0.4014 MGGVFWPKPALPNPLPTPNDDDVEGSIRHVVVSQVLELGIVSHSMIIGLSLGVSQSPCTMRPLIAALSFHQFFEGFALGGCISEAKFKTSSATIMSCFFALTTPIGVAIGTCIASNFNPYSPGALITEGILDSLSAGILVYMALVDLIAADFHSKRMRCSFRLQIISFCLLFIGAGCMSSLALWA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00512 185 NCBIfam ZIP zinc/iron transport family 20 185 IPR004698 GO:0005385|GO:0016020|GO:0071577
Trre1g00512 185 PANTHER ZINC/IRON TRANSPORTER 28 178 - -
Trre1g00512 185 Pfam ZIP Zinc transporter 21 182 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00512 Trre-Chr1 3836800 3838534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00512 20 185 Inorganic Solute Cotransporters AT1G10970 78.313 5.99e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00512 K14709 - gmx:100809426 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00512 1 3836800 3838534 Trre5g05004 5 51608402 51610339 PCT