Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00511 ATGACTCCTGTTTCACTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCATCAATTTTTCTCCTATTCATCAGGACCCTCCAACCTTGTTTAACTTGCTTGGAGGACATGATCATCATCAGGATCATGATAAGCTGAAATTTCAACAAGATGGATCATCATCAAACAATCATGAACAAGTCTATAATAATTCATCAAGTGATCCAAGCAGTGCACGTGACACAAATTTATCATCTTCCTTAGAAGAAGAAGAAGAAAGTGGTCACGGGTCAGAGAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAAATGATCAACAAAACTGCTACTACTGATGATGCTACCAAAACTTCAATGATGAGATCAAGTAACAACAGTGCTGACAAAGTAGCAATTATCAACACAAATGTTGCTACCACAAATCCAATGATGAATCCAAGTCAAAGAAGCCCTCATAGTAATAACAGCGGCGGTAACAACATTATTAGGGTTTGCTCGGATTGTAAAACAACTACTACCCCACTTTGGAGAAGTGGACCTATGGGCCCTAAGTCGCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGAAAGTGCAAATGGTTTGGCCAGTTCCCCAAAGCCTAAAGTGCATAACAAGGAAAAGAAGCCTAGTGTAAACAATACTACACAATTCAAGAAAAAGAGCAAGTCTATTACTACTACTACTCCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAACAAGCTTGAATCTTATGCATTGAATTTGAGAAACAACTCAGACTTTGAAGATGTGTTTCATTCTGATGAAGCAACTGAGGCGGCTTTACTTCTTATGCGTATATCTTCTGGCAAAAATTTTTACTCTTAA 915 0.3858 MTPVSLNPPGPNSLLQGQNQFINFSPIHQDPPTLFNLLGGHDHHQDHDKLKFQQDGSSSNNHEQVYNNSSSDPSSARDTNLSSSLEEEEESGHGSEKWMSSKMRLMKKMINKTATTDDATKTSMMRSSNNSADKVAIINTNVATTNPMMNPSQRSPHSNNSGGNNIIRVCSDCKTTTTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAESANGLASSPKPKVHNKEKKPSVNNTTQFKKKSKSITTTTPTTSAGSSSQDVNKLESYALNLRNNSDFEDVFHSDEATEAALLLMRISSGKNFYS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00511 304 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 42 299 - -
Trre1g00511 304 MobiDBLite consensus disorder prediction 205 260 - -
Trre1g00511 304 MobiDBLite consensus disorder prediction 54 81 - -
Trre1g00511 304 CDD ZnF_GATA 169 206 IPR000679 GO:0006355|GO:0043565
Trre1g00511 304 ProSitePatterns GATA-type zinc finger domain. 170 195 IPR000679 GO:0006355|GO:0043565
Trre1g00511 304 MobiDBLite consensus disorder prediction 82 100 - -
Trre1g00511 304 Pfam GATA zinc finger 170 203 IPR000679 GO:0006355|GO:0043565
Trre1g00511 304 Gene3D - 166 248 IPR013088 GO:0006355|GO:0008270
Trre1g00511 304 MobiDBLite consensus disorder prediction 33 100 - -
Trre1g00511 304 MobiDBLite consensus disorder prediction 230 260 - -
Trre1g00511 304 ProSiteProfiles GATA-type zinc finger domain profile. 168 200 IPR000679 GO:0006355|GO:0043565
Trre1g00511 304 SMART GATA_3 164 215 IPR000679 GO:0006355|GO:0043565
Trre1g00511 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 165 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00511 Trre-Chr1 3830826 3833270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00511 95 299 C2C2-Gata Transcription Factor Family AT5G56860 35.019 2.53e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre1g00511 GATA 4.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00511 - - mtr:11422443 282.337