Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00510 ATGAGAGCAGAAAATGATCCAACTCTATTACAAGAGTTGGAAGAAAAAAAGGAATTAGAAAACCGTGCTAAGGCTAAAAACACCATTTTGGTTTGCTCCCAATGTAAGACAAGGAGTACCCCACTTTGGAGGAAGGGCCCTAAGGGTCCAAAGACACTTTGTAATGCTTGTGGGCTAAGACTAGCAAGATTGGAAAAGGCAGCTGCTAAAGAAGATTGTGGAAAGAACAAGGCTCCTGCTAATTCTACTGGCTCATCATCTGCTTCTACTAAGAAGTGA 279 0.4194 MRAENDPTLLQELEEKKELENRAKAKNTILVCSQCKTRSTPLWRKGPKGPKTLCNACGLRLARLEKAAAKEDCGKNKAPANSTGSSSASTKK 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00510 92 Coils Coil 9 29 - -
Trre1g00510 92 Pfam GATA zinc finger 32 62 IPR000679 GO:0006355|GO:0043565
Trre1g00510 92 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 67 - -
Trre1g00510 92 MobiDBLite consensus disorder prediction 70 92 - -
Trre1g00510 92 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 14 87 - -
Trre1g00510 92 CDD ZnF_GATA 31 60 IPR000679 GO:0006355|GO:0043565
Trre1g00510 92 SMART GATA_3 26 77 IPR000679 GO:0006355|GO:0043565
Trre1g00510 92 Gene3D - 30 67 IPR013088 GO:0006355|GO:0008270
Trre1g00510 92 ProSiteProfiles GATA-type zinc finger domain profile. 26 59 IPR000679 GO:0006355|GO:0043565
Trre1g00510 92 ProSitePatterns GATA-type zinc finger domain. 32 57 IPR000679 GO:0006355|GO:0043565
Trre1g00510 92 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00510 Trre-Chr1 3811247 3812079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00510 32 68 C2C2-Gata Transcription Factor Family AT2G18380 64.865 1.14e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre1g00510 GATA 2.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00510 - - zju:107420088 71.2478