Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00500 ATGCTAGTGCCACTTTTTCTCCTTTTTCTGCTCCTACCTCATTCTTCTCTCGCCGTTCGACCTATTCATTCCGATCCGTTCGAGTTCCAACTCGCTAACTCAACCGATTCCAATGTCTCCCTCTCCAATCCTCGACAAGGTTCCTTCGCTGACATCATTGATCGAGCTCTTCAGCATGAGTTCACCGACTCCGATCAAAACGAAGTGCCTGATGCGGGAGGTTTCAACAACAGTGTAGCAGAACAACAGGCTGTTCTAGAGACTGTGGCCAGAGTCACGCCGAACAAGAATGACACTAAAGATGAAAAGTCATTTCAGCTCCATCATGTATTCAATAGAGGCGAGGACACCCCAATGTTAATAGATCGAAAGGACAATGTATTTATCATTTCTAACTTTAAATCCAAGTATCCAGTGCTGCAGCTAGATTTACGATTGATTTCAGACTTGGTCATTGCTATTGTTTCGGCAACTTGTGGTGGTGTTGCATTTGCTTTTGCTGGACAACCGGTCATTACTGGATATCTTCTAGCTGGCTCCATTGTTGGACCTGGAGGCTTTAACTTCATCAATGAAATGGTGCAGGTGGAAACAGTGGCTCAATTTGGCGTAATATTTATTCTCTTTGCATTGGGCCTCGAGTTTTCCATGGCAAAGCTTCGAGTTGTTCGATCTGTTGCTGTTCTTGGAGGCTTACTTCAAATTTTTTTATTTATGTGCATGTGTGGTTTTACTGTATCGTTATGTGGTGGTAAAGCTTCAGAAGGGATTTTTGTTGGTGCTTTCCTTTCTATGTCTTCAACAGCAGTGGTCTTGAAGTTTTTGATGGAAAAGAATAATACTAATGCCCTTCATGGCCAAGTCACAATTGGGACCCTTATTTTACAGGATTGTGCTGTTGGATTGCTCTTTGCATTGCTTCCTGTTTTGGGTGGCACCTCAGGTGTTTTTCAAGGAGTGTTATCAATGACAAAACTGTTGGTGACATTGATTGCATTTCTCTCTATTCTGTCTATATTGTCTCGCACTTGCCTTCCGTGGTTGCTTAAACTGATGATAAGCCTATCATCACAGACAAATGAACTCTATCAGCTGGCGTCTGTTGCGTTCTGCTTGCTTGTAGCCTGGTGTAGCGATAAGCTGGGATTAAGTCTAGAACTAGGTTCCTTTGCTGCTGGAGTGATGATTGCAACCACTGATCTGGCTCAACATACACTAGAGCAAATTGAACCTATTTGCAATCTTTTCGCTGCTCTTTTCCTTTCCAGCATTGGAATGCTGATTCATGTTCATTTTCTTTGGAACCATGTTGATATTTTGGTAGCATCTGTTATTTTAGTGATTGTTATAAAAACAATCATAATTGCTTCAGTTGTGAAAGGATTTGGTTACAATAACAAGACTTCAGTACTTGTAGGAATGTCCATGGCACAAATAGGAGAATTTGCTTTTGTTCTTCTCAGTCGTGCTTCAAATCTTCATCTAGTTGAGGGTAAACTATATCTGCTGCTTCTTGGGACCACAGCTCTTAGTCTGGTCACAACTCCTTTACTTTTCAAGCTGATTCCTGCCGTAGTGCATCTTGGTGTGCTATTGAGGTGGTTTTCTCCTGACAGTGCAGTAGAGATTGGATATAAGGTAGACAACCTCCTTCGCTCAGATAGCATTAAGCAACGGATAGTTTTGATGGACAAAGAAGCTCGCGATTGCTAA 1713 0.4203 MLVPLFLLFLLLPHSSLAVRPIHSDPFEFQLANSTDSNVSLSNPRQGSFADIIDRALQHEFTDSDQNEVPDAGGFNNSVAEQQAVLETVARVTPNKNDTKDEKSFQLHHVFNRGEDTPMLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIAIVSATCGGVAFAFAGQPVITGYLLAGSIVGPGGFNFINEMVQVETVAQFGVIFILFALGLEFSMAKLRVVRSVAVLGGLLQIFLFMCMCGFTVSLCGGKASEGIFVGAFLSMSSTAVVLKFLMEKNNTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVFQGVLSMTKLLVTLIAFLSILSILSRTCLPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMIATTDLAQHTLEQIEPICNLFAALFLSSIGMLIHVHFLWNHVDILVASVILVIVIKTIIIASVVKGFGYNNKTSVLVGMSMAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLRWFSPDSAVEIGYKVDNLLRSDSIKQRIVLMDKEARDC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00500 570 Pfam Sodium/hydrogen exchanger family 151 520 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre1g00500 570 Gene3D - 144 527 IPR038770 -
Trre1g00500 570 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 36 552 IPR045158 GO:0015386|GO:0071805|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00500 Trre-Chr1 3731321 3738686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00500 43 568 Antiporters AT5G11800 80.075 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00500 K26735 - gmx:100811030 942.954