Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00495 ATGGAGAATGGTGTATACAATGTTGCAATGAACATGACTGGTCAAATTTCTAATGTCATAGAAGATATCACACAACAATTAACACAAAAGCCACTCATTCAATGCTATTCATTTGACCTTAACAATCAAAACATTATAAATGGAATTCCAATACTTTCTAGTGAACAAAATCAACAACATGTTGATGGTAGTAGTAGTAGTAGTTTCATAAATCATTCAACTATTGCTGATTCTACTTCATTTGTTACATCACAACATGGAAGGACTATTGTGGAAAATCCCTCAAATTTCATTGTTAACAACAATGATTTTTCAGTTCCTGCTAGAATTGGTCTTCAAGAAAATTTTGAAGCTATGGTGGTTCCATACATGTTCAATAATTGGAATGATGCATCAAACTCAAACCCTTTGTGTGCAACTTTTGGTGATAGTAGTAGCCATGTTAACAAGTTTTTGAAAGCTCAAGAGGGTAATGATAATGGATTCATGTCGTCATATTCGTCGATAGCAAACATTGATCCGAACGGATGGCATTCGTCACATGCTGCAAATTTGACAAATCTTGCTTATAGTTCATCAAATTGTAGCAATGATCTTTCACTAAGTCTTGCAACATCTCCGAATTCAGGTCAGTGTTCAGAGATTAGTTGCTCTGACTTAACTCATAGCATGAATGGAACAAGATCAGGTTTGGAACAAGCCTCATGCAGTAGTATGGAACTTTCTATGAGTTTAGGGAATGATAAACATGTTAAATTTTCGCCGGCGATATTAGGATCAAGATACCTTGCTGTAATTCAGGAGATACTTGTTCAAATTGCAACATATTCATTTGAAAATCTAAATCTTGATGAGATAAATCATTCGGCTTCCGGTGTTAGAGGAGTACGAGGAAATAAATCAAGTTCATCGAATGCAGACAAGCGAAGGATAGGAGTAAACCACAACAATAGTTCTATGTCAGAAGCATATGCTAATTCTTCATTGCAAAGACATGCTGCTGAATCAAAGAAATCACAACTTCTGATGCTTCTGCAGCTGGTGGACAGCCAATATAATCGATGTTTGGAAGAGATTCACACAATTGTATCTGCATTTCATGCTGCTACTGAGCTTGATCCTCAAATACATGCGCATTTCGCTGTTAAAACAGTTTCTCGACTATATAAGGATTTGAGAGACAGGATTAGTAATCATATTCTTGCCATGGGATCTAACTTTAACAGCTCATTATCAGAAGAGGATAATGAATTGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGGAAAGACCAGTTATGGAGGCCTCAAAGGGGCTTGCCTGAAAAATCTGTTTCTGTTCTTCGTGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAATAAAAAGTGGGTTGACTAGAAGCCAGGTAGCAAACTGGTTTATAAATGCGCGTGTTCGTCTATGGAAACCATTGATTGAAGAGATGTATGCTGAAATGAATAGAAGAAAGGCTTGTCGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATTAACAATCAATTGTTTAATATCAATTGA 1623 0.3641 MENGVYNVAMNMTGQISNVIEDITQQLTQKPLIQCYSFDLNNQNIINGIPILSSEQNQQHVDGSSSSSFINHSTIADSTSFVTSQHGRTIVENPSNFIVNNNDFSVPARIGLQENFEAMVVPYMFNNWNDASNSNPLCATFGDSSSHVNKFLKAQEGNDNGFMSSYSSIANIDPNGWHSSHAANLTNLAYSSSNCSNDLSLSLATSPNSGQCSEISCSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPAILGSRYLAVIQEILVQIATYSFENLNLDEINHSASGVRGVRGNKSSSSNADKRRIGVNHNNSSMSEAYANSSLQRHAAESKKSQLLMLLQLVDSQYNRCLEEIHTIVSAFHAATELDPQIHAHFAVKTVSRLYKDLRDRISNHILAMGSNFNSSLSEEDNELSVETSFIQKQWALQQLKRKDQLWRPQRGLPEKSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVANWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQLFNIN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00495 540 SMART HOX_1 441 505 IPR001356 GO:0003677
Trre1g00495 540 SMART prehox3 251 398 IPR006563 -
Trre1g00495 540 Pfam Associated with HOX 257 397 IPR006563 -
Trre1g00495 540 MobiDBLite consensus disorder prediction 292 317 - -
Trre1g00495 540 CDD homeodomain 441 501 IPR001356 GO:0003677
Trre1g00495 540 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 179 524 - -
Trre1g00495 540 Gene3D - 444 523 - -
Trre1g00495 540 MobiDBLite consensus disorder prediction 294 317 - -
Trre1g00495 540 ProSiteProfiles 'Homeobox' domain profile. 438 501 IPR001356 GO:0003677
Trre1g00495 540 Pfam Homeobox KN domain 458 497 IPR008422 GO:0003677|GO:0006355
Trre1g00495 540 SUPERFAMILY Homeodomain-like 442 510 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00495 Trre-Chr1 3691476 3693895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00495 197 514 Homeobox Transcription Factor Family AT4G32980 55.763 1.73e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre1g00495 POX 6.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00495 - - gmx:100812648 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00495 1 3691476 3693895 Trre1g00495 1 3691476 3693895 ECH