Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00483 ATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGAATCCCTCAAGTTCATGATGAGAATATCATGATTTTTGAAGCAAGCAAGATTCAACGTGAGACTCAGATACTTAGCTCTATTTACTCTAAACAAGGTACTAAAGGTCTCAACCAAGATGCTGCCTCTCTTTACAAGGGTTATGGGATTGAAGATGGGGCATTTTGTGGTGTTTATGATGGACATGGAAGGAATGGACATATAGTGAGCAAAATAGTAAACAATAGTTTACCTTCTCTCATATTGAGCCAAAAGAATGCTATTGAGGAGATTGATAAAATAAAAAATGGTGTTGACAACAAACAAAACCAATTTTCAAAAAACTTTCTAAATATGAAAGAAGCTATTCTTGGTGCTTTCAAAGTGATGGATGAGGAGGTGAAGTTACAAGAGAATCTTGATTGTTCTTGTAGTGGAACCACTGCTGTAGTTGTCATAAGACAGGATGAAGGACTTGTCATAGCTAATTTGGGTGACTCAAGAGCAATCTTAGGGACAATTCATGATGCAAAACTCAAAGCTATTCAATTGACTACAGATTTGAAGCCTGGATTGCCTTGCGAAGCAAAGAGAATAAGGAGTTGCAACGGTTGTGTATATGCGCTGAAGGAAGAACCACATGTCCAACGGGTATGGTTACCTAACGAGAACTACCCGGGTCTAGCCATGTCTAGAGCTTTTGGAGATTTCATACTCAAGGACCATGGTGTTATTGCTATTCCAGATATTTTTTATCACCCTTTAACATCAAGTGACCAATTTATCGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGTAATGAGGAGGTTGCATCAATTGTGTGGATGATCCAAAGTGAAGAGGAAGCTGCAAGGGCAGTGGTGGAAGCAGCCACAGCTGCTTGGGCAAAGAAGTATCCCTTCTCTAGGGTAGATGACTGTACAGTGGTTTGCCTTTTCCTGCAGAAGAAGCCACAAATCTTGGGGTATATGGACAAGGGAAAATTAGGATAA 1035 0.4019 MGICISVASSEIHGIPQVHDENIMIFEASKIQRETQILSSIYSKQGTKGLNQDAASLYKGYGIEDGAFCGVYDGHGRNGHIVSKIVNNSLPSLILSQKNAIEEIDKIKNGVDNKQNQFSKNFLNMKEAILGAFKVMDEEVKLQENLDCSCSGTTAVVVIRQDEGLVIANLGDSRAILGTIHDAKLKAIQLTTDLKPGLPCEAKRIRSCNGCVYALKEEPHVQRVWLPNENYPGLAMSRAFGDFILKDHGVIAIPDIFYHPLTSSDQFIVLASDGVWDVLSNEEVASIVWMIQSEEEAARAVVEAATAAWAKKYPFSRVDDCTVVCLFLQKKPQILGYMDKGKLG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00483 344 Pfam Protein phosphatase 2C 65 307 IPR001932 -
Trre1g00483 344 Coils Coil 97 117 - -
Trre1g00483 344 SUPERFAMILY PP2C-like 26 329 IPR036457 -
Trre1g00483 344 PANTHER PROTEIN PHOSPHATASE 41 326 IPR015655 GO:0004722|GO:0006470
Trre1g00483 344 CDD PP2Cc 37 289 IPR001932 -
Trre1g00483 344 Gene3D - 19 331 IPR036457 -
Trre1g00483 344 ProSiteProfiles PPM-type phosphatase domain profile. 38 328 IPR001932 -
Trre1g00483 344 SMART PP2C_4 28 326 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00483 Trre-Chr1 3607670 3609456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00483 1 333 PP2C-type Phosphatase Gene Family AT5G26010 52.647 5.69e-108 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00483 - - aip:107605550 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00483 1 3607670 3609456 Trre1g00483 1 3607670 3609456 ECH