Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00473 ATGGATTTCACCAAGTGCTTGTATGCTTTTAAGTCCTCACATATAGTAGATCTAAAGTTCAGCTCAAGAACAAAAACAATAATCACACCAACATTGGTTGGCACAAAGTGTAAAGGTGTGGAGTTATTGGGTGTTCTTGTAGCTGCCGGGTTGCAAGTGCTTCAAGAAAAGAACCTCATACATCGAGATTTAAAACCACAAAACTTACTGTTGGCAACTATATCAGCTACACCACTTATGAAAATAGGGGATTTTGGTTTTGCAAGGTCTCTCACACCTCTGCAGTTGGCAGATACACTATGTGGTTCACCTTATTACATGGCACCTGGGATAATTCAGAGTCATATGATGCCAAGGCTTGGTTTCATTATTGTGTTCTTGTCTTTTTGGCATCAAAGTGTTCAATGA 408 0.3946 MDFTKCLYAFKSSHIVDLKFSSRTKTIITPTLVGTKCKGVELLGVLVAAGLQVLQEKNLIHRDLKPQNLLLATISATPLMKIGDFGFARSLTPLQLADTLCGSPYYMAPGIIQSHMMPRLGFIIVFLSFWHQSVQ 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00473 135 Gene3D Transferase(Phosphotransferase) domain 1 40 119 - -
Trre1g00473 135 SMART serkin_6 4 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00473 135 SUPERFAMILY Protein kinase-like (PK-like) 7 114 IPR011009 -
Trre1g00473 135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 59 71 IPR008271 GO:0004672|GO:0006468
Trre1g00473 135 Pfam Protein kinase domain 46 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00473 135 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00473 135 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 47 114 IPR045269 GO:0004674|GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00473 Trre-Chr1 3533913 3535952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00473 11 135 EF-hand Containing Proteins AT3G51850 31.579 5.02e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Trre1g00473 Pkinase 2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00473 - K08269 tpra:123884297 128.642