Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00472 ATGAAGGACAATCTTCTGAAGCTAACCGATTCCCTCCAGAAATCGTTCACTGATCATTCTCTCGAAATTGCGATCCCTAATTGCAGAATCAGGCTCAGTGAACCCAAATCGAAACTCAGTGAAACGAATGGAAGCTCTCTCATCCCATTCCTCTCCCTCCGACTGAAAATACAAATAGTGTTGCTGCTGTGTCTGCAAAGCTCTGGAAGAATAGAAGGCTGTGGTGCATGCTATCATGTGAGGTGCAAAATACCACAATTATGTGATGACAATGGAGCATATGTTGTGGTAACAGACTATGGCGAGGGAGATAGAACTGATTTCATAATGAGTCCACGCGCCTTGTTGTTGAATGGATATTTAGGGTTTGAGAATGTTTATTGTCTGTTATAA 393 0.4224 MKDNLLKLTDSLQKSFTDHSLEIAIPNCRIRLSEPKSKLSETNGSSLIPFLSLRLKIQIVLLLCLQSSGRIEGCGACYHVRCKIPQLCDDNGAYVVVTDYGEGDRTDFIMSPRALLLNGYLGFENVYCLL 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00472 130 Gene3D - 65 117 IPR036908 -
Trre1g00472 130 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 130 IPR007112 -
Trre1g00472 130 SUPERFAMILY Barwin-like endoglucanases 73 114 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00472 Trre-Chr1 3531064 3533753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00472 73 125 Expansin Gene Family AT4G17030 62.264 1.98e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00472 - - gmx:100777427 90.8929