Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00462 ATGTTTCATGTTCAATCAAGTGGATCAGATCATTGTTTTCAACAACAACACACTGCTGTGAAAACTGAAGCAAATAGTAGTTCACAACTTCACACTCCAATTTTTCATTACCCTAATTTAATGAGAACAAATATTATTCCTCCCAATAATATTATCCATAATAATAATCATCATCAAGGAGGAGGAGGAGGAGGAGGTGGGAGTCCAAGCAGTTCTAGTAATGAAGCTGAAGCTATAAAAGCTAAAATCATTGCTCATCCTCAATACTCAAGTCTTTTACAAGCTTACATGGATTGTCAAAAGGTTGGAGCTCCACCGGATGTGGTGGCGCGTCTGGTTGCGGCTAGGCAAGAGTTTGAAGCACGACAAAGATCTTCAGTTAACTCCAGGGAAAATTCCAAAGATCCAGAACTCGACCAATTCATGGAAGCATATTACGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAAGAGAATAGAAACTCAGCTAAATACTCTTTGCAATGGTCCCCTTCGTATCTTCCCTCCTGAAGATAAAAATGAAGGTGCTGATTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCCGAGATTGATCCTCGAGCAGAAGACCGCGAACTGAAAAACCACTTGCTGAAAAAATATAGTGGTTACTTAAGTAGTCTTAAGCAAGAACTTTCTAAGAAGAAAAAGAAAGGAAAATTGCCTAAAGAAGCTAGGCAGAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCATATCCATCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAATTGGTTCATCAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGATATGCAGTTTATGGTGATGGATGGACTGCATCCTCAGAGTGCAGCTCTTTATATGGATGGTCACTACATGGCCGATGGTCCCTACCGTCTAGGGCCATAG 1023 0.4037 MFHVQSSGSDHCFQQQHTAVKTEANSSSQLHTPIFHYPNLMRTNIIPPNNIIHNNNHHQGGGGGGGGSPSSSSNEAEAIKAKIIAHPQYSSLLQAYMDCQKVGAPPDVVARLVAARQEFEARQRSSVNSRENSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMKRIETQLNTLCNGPLRIFPPEDKNEGADSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00462 340 SMART ELK_2 222 243 IPR005539 GO:0003677
Trre1g00462 340 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677
Trre1g00462 340 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677
Trre1g00462 340 MobiDBLite consensus disorder prediction 48 76 - -
Trre1g00462 340 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 312 - -
Trre1g00462 340 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g00462 340 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677|GO:0006355
Trre1g00462 340 ProSitePatterns 'Homeobox' domain signature. 280 303 IPR017970 GO:0000981|GO:0006355
Trre1g00462 340 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Trre1g00462 340 FunFam Homeobox protein knotted-1-like 2 247 309 - -
Trre1g00462 340 Gene3D - 239 312 - -
Trre1g00462 340 Pfam KNOX1 domain 78 120 IPR005540 GO:0003677|GO:0005634
Trre1g00462 340 SUPERFAMILY Homeodomain-like 243 317 IPR009057 -
Trre1g00462 340 Pfam ELK domain 222 243 IPR005539 GO:0003677
Trre1g00462 340 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Trre1g00462 340 MobiDBLite consensus disorder prediction 181 216 - -
Trre1g00462 340 CDD homeodomain 254 306 IPR001356 GO:0003677
Trre1g00462 340 Pfam KNOX2 domain 133 178 IPR005541 GO:0003677|GO:0005634
Trre1g00462 340 SMART HOX_1 244 309 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00462 Trre-Chr1 3425956 3430722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00462 9 340 Homeobox Transcription Factor Family AT4G08150 68.895 2.85e-152 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre1g00462 KNOX2 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00462 - - vum:124822256 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00462 1 3425956 3430722 Trre1g00462 1 3425956 3430722 ECH