LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g00461	ATGGAAGAATACACGAATAATCCAAATCAAAATCAAAGTTCAAGGCCAAATTTCTTGTACTCTATTGCTAGTGGAAACAACCAACACCAAAACCAAAACCAAAACCAAAACCAACATCATAATAATCAAATTCCAATGAACATGTTTCATGTTCAATCAAGTGGATCAGATCATTGTTTTCAACAACAACACACTGCTGTGAAAACTGAAGCAAATAGTAGTTCACAACTTCACACTCCAATTTTTCATTACCCTAATTTAATGAGAACAAATATTATTCCTCCCAATAATATTATCCATAATAATAATCATCATCAAGGAGGAGGAGGAGGAGGAGGTGGGAGTCCAAGCAGTTCTAGTAATGAAGCTGAAGCTATAAAAGCTAAAATCATTGCTCATCCTCAATACTCAAGTCTTTTACAAGCTTACATGGATTGTCAAAAGGTTGGAGCTCCACCGGATGTGGTGGCGCGTCTGGTTGCGGCTAGGCAAGAGTTTGAAGCACGACAAAGATCTTCAGTTAACTCCAGGGAAAATTCCAAAGATCCAGAACTCGACCAATTCATGGAAGCATATTACGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAAGAGAATAGAAACTCAGCTAAATACTCTTTGCAATGGTCCCCTTCGTATCTTCCCTCCTGAAGATAAAAATGAAGGTGCTGATTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCCGAGATTGATCCTCGAGCAGAAGACCGCGAACTGAAAAACCACTTGCTGAAAAAATATAGTGGTTACTTAAGTAGTCTTAAGCAAGAACTTTCTAAGAAGAAAAAGAAAGGAAAATTGCCTAAAGAAGCTAGGCAGAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCATATCCATCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAATTGGTTCATCAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGATATGCAGTTTATGGTGATGGATGGACTGCATCCTCAGAGTGCAGCTCTTTATATGGATGGTCACTACATGGCCGATGGTCCCTACCGTCTAGGGCCATAG	1164	0.3943	MEEYTNNPNQNQSSRPNFLYSIASGNNQHQNQNQNQNQHHNNQIPMNMFHVQSSGSDHCFQQQHTAVKTEANSSSQLHTPIFHYPNLMRTNIIPPNNIIHNNNHHQGGGGGGGGSPSSSSNEAEAIKAKIIAHPQYSSLLQAYMDCQKVGAPPDVVARLVAARQEFEARQRSSVNSRENSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMKRIETQLNTLCNGPLRIFPPEDKNEGADSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g00461	387	ProSiteProfiles	'Homeobox' domain profile.	289	352	IPR001356	GO:0003677
	Trre1g00461	387	SUPERFAMILY	Homeodomain-like	290	364	IPR009057	-
	Trre1g00461	387	ProSitePatterns	'Homeobox' domain signature.	327	350	IPR017970	GO:0000981\|GO:0006355
	Trre1g00461	387	MobiDBLite	consensus disorder prediction	228	263	-	-
	Trre1g00461	387	Gene3D	-	286	359	-	-
	Trre1g00461	387	ProSiteProfiles	ELK domain profile.	269	289	IPR005539	GO:0003677
	Trre1g00461	387	SMART	HOX_1	291	356	IPR001356	GO:0003677
	Trre1g00461	387	FunFam	Homeobox protein knotted-1-like 2	294	356	-	-
	Trre1g00461	387	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	39	359	-	-
	Trre1g00461	387	MobiDBLite	consensus disorder prediction	1	41	-	-
	Trre1g00461	387	SMART	KNOX1_2	124	168	IPR005540	GO:0003677\|GO:0005634
	Trre1g00461	387	Pfam	KNOX2 domain	180	225	IPR005541	GO:0003677\|GO:0005634
	Trre1g00461	387	Pfam	ELK domain	269	290	IPR005539	GO:0003677
	Trre1g00461	387	CDD	homeodomain	301	353	IPR001356	GO:0003677
	Trre1g00461	387	Pfam	KNOX1 domain	125	167	IPR005540	GO:0003677\|GO:0005634
	Trre1g00461	387	SMART	KNOX2_2	175	226	IPR005541	GO:0003677\|GO:0005634
	Trre1g00461	387	SMART	ELK_2	269	290	IPR005539	GO:0003677
	Trre1g00461	387	MobiDBLite	consensus disorder prediction	98	123	-	-
	Trre1g00461	387	Pfam	Homeobox KN domain	309	348	IPR008422	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g00461	Trre-Chr1	3425956	3430863	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g00461	56	387	Homeobox Transcription Factor Family	AT4G08150	68.895	1.57e-152	434

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Trre1g00461		KNOX2	3.5e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g00461	-		-	gmx:100800822	540.421