Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00460 ATGAATTTTGATGATACCTCCAACACAAATTTTCATGTTGATCTTGATCTTGATCTTGGTCTTGCCCTTCGTGATCAATATTTTGATGGCCATAGGAAGAGGGAAAGCAAGAAAAAAGAGGAGAATCCATCAAAATATAATAAAGCTTATCCTTCTCTTACATTAGGACCATCAAATGAAGAGCATGAAGAAACTAGTAATATTATTCTAGATTCAGCTTCAAAGATTGAGTCTTGTGATCAAAATTTACTTACTTCTCCAAGCATAGAGTCTTCATTTTCGAACTCAACAAGCACAAAGAAGGAGAAATGTGAGGAACTTGAGGTAGAGATTGAGAAGGTTTCAATTATAAAGATTGGAAATGTTGATGAAGATGGTAATCCAAGAAAGAAACTTAGGCTCACAAAAGAACAATCGGAAGTGTTGGAGGAAAATTTCAAAGAGCATTCTACTCTTAATCCGAAGCAAAAGCAAGCATTAGCAAAAAAGCTGAATCTACAGGCAAGGCAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGGACAAAACTGAAACAAACGGAATCAGATTTTGAAGAACTAAAGAAGTGTTGCGAAACTCTAACAGAAGAGAACAAAATGTTGCAAAAGGAGCTACAAGAATTGAAGTCAATGCAAACAGTGGCAACAACTACAACACCTCTTTATATGCAGATTCCAACAGCAACACTTACAATATGTCCTTCTTGTGAGACAATTTGTGATGGTAACAACAACAATGATTACCCACCTACAACAACATTGCTTATAGGCTCAAATGCTCATGGTCTCTATAAAAATAATAATGGTGATAATTATGAATTTACTCACTCATCATCTGCAGCATGTTAG 870 0.3575 MNFDDTSNTNFHVDLDLDLGLALRDQYFDGHRKRESKKKEENPSKYNKAYPSLTLGPSNEEHEETSNIILDSASKIESCDQNLLTSPSIESSFSNSTSTKKEKCEELEVEIEKVSIIKIGNVDEDGNPRKKLRLTKEQSEVLEENFKEHSTLNPKQKQALAKKLNLQARQVEVWFQNRRARTKLKQTESDFEELKKCCETLTEENKMLQKELQELKSMQTVATTTTPLYMQIPTATLTICPSCETICDGNNNNDYPPTTTLLIGSNAHGLYKNNNGDNYEFTHSSSAAC 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00460 289 CDD homeodomain 128 186 IPR001356 GO:0003677
Trre1g00460 289 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Trre1g00460 289 SUPERFAMILY Homeodomain-like 125 186 IPR009057 -
Trre1g00460 289 MobiDBLite consensus disorder prediction 31 65 - -
Trre1g00460 289 Coils Coil 177 218 - -
Trre1g00460 289 Pfam Homeobox associated leucine zipper 185 218 IPR003106 GO:0006355|GO:0043565
Trre1g00460 289 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Trre1g00460 289 Gene3D - 120 191 - -
Trre1g00460 289 SMART HOX_1 127 189 IPR001356 GO:0003677
Trre1g00460 289 FunFam Homeobox-leucine zipper protein 18 113 190 - -
Trre1g00460 289 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Trre1g00460 289 MobiDBLite consensus disorder prediction 31 45 - -
Trre1g00460 289 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Trre1g00460 289 MobiDBLite consensus disorder prediction 47 65 - -
Trre1g00460 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 39 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00460 Trre-Chr1 3414439 3416838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00460 1 246 Homeobox Transcription Factor Family AT4G37790 45.312 4.83e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre1g00460 Homeodomain 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00460 K09338 - gmx:100797650 279.256