Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00459 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATACTAAGCTCAAATCTTACATAGAACAACATGGTACTGGTGGTAACTGGATTGCTCTTCCACAAAAAATTGGTTTGAAGCGTTGTGGAAAGAGTTGTCGTCTAAGGTGGCTAAACTATCTTCGCCCTAATCTCAAGCATGGTGGTTTCTCCGAAGAAGAAGATAACATTATTTGTAGTCTTTACATTAGTATTGGAAGCAGGTGGTCGATAATTGCAGCTCAATTGCCAGGAAGAACAGATAATGACATAAAGAATTATTGGAACACAAGGTTGAAAAAGAAGCTTTTGGGGAAGCACCGTAAAGAACAACAACAAGCACGTAATAGAGGCAATAATGGTGTTATTATTAAGCAAGAAAGCAATATTAATCATAGTGATCAATATTCCTTGTCAAATTTGGTTCAAGAGCAACCATATTTGCCACATGTAATGCAAAATTTGCTATCAACACCTCCACCACCGGCACCGCCACAGCCGCCAATGTTGTCATCATACACAAACCAAGGCTTCAATGATCAAGATTCTATTAGAAAACTACTTATCAAGCTTGGAGGAAGATTTTCAGGTGATTATCATTCTAATCCTAGTACTAATAACTTTGATGGTTTGAATATTCCATTCTCAAATGCTACTTCTTCATCTCATGAACAAGTTTATGATCAAGAACATGTTGGTTCTTCTACTTGTGTTAACTCTTCCAATGGTAACAATAATAACAACCAAGTACAATTTGTACAAAATGGTCAATACTTTGACTCGGTGCAAGAAGAACAAGGAAAATTTATTCAAGAAATTGATCATATGGTATCTACTAATAATTATCCACAAAGATTTGATGGGTTGGAATTCTTTTTTGGTGAAGAAGACATCATGAGTATTGATAATAATAAGATAGAAGGTTCTAGTACTAATTGGGGTGAAGCTACAACTTCAAGTTATCATCATCCTCTTGATTCAAAATACCAAGGTTAA 1038 0.3603 MGRAPCCDKANVKKGPWSPEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQQARNRGNNGVIIKQESNINHSDQYSLSNLVQEQPYLPHVMQNLLSTPPPPAPPQPPMLSSYTNQGFNDQDSIRKLLIKLGGRFSGDYHSNPSTNNFDGLNIPFSNATSSSHEQVYDQEHVGSSTCVNSSNGNNNNNQVQFVQNGQYFDSVQEEQGKFIQEIDHMVSTNNYPQRFDGLEFFFGEEDIMSIDNNKIEGSSTNWGEATTSSYHHPLDSKYQG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00459 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre1g00459 345 CDD SANT 71 113 IPR001005 -
Trre1g00459 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Trre1g00459 345 Gene3D - 70 139 - -
Trre1g00459 345 MobiDBLite consensus disorder prediction 169 183 - -
Trre1g00459 345 FunFam Transcription factor RAX3 7 68 - -
Trre1g00459 345 FunFam Transcription factor RAX3 70 149 - -
Trre1g00459 345 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Trre1g00459 345 SMART sant 13 64 IPR001005 -
Trre1g00459 345 SMART sant 67 115 IPR001005 -
Trre1g00459 345 MobiDBLite consensus disorder prediction 166 191 - -
Trre1g00459 345 PANTHER OS09G0431300 PROTEIN 1 279 - -
Trre1g00459 345 CDD SANT 16 62 IPR001005 -
Trre1g00459 345 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre1g00459 345 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Trre1g00459 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre1g00459 345 MobiDBLite consensus disorder prediction 323 345 - -
Trre1g00459 345 Gene3D - 7 68 - -
Trre1g00459 345 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00459 Trre-Chr1 3404735 3406359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00459 1 227 MYB Transcription Factor Family AT3G49690 57.447 4.60e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g00459 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00459 K09422 - gmx:778079 371.318