Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00441 ATGAAATCCATGATGAATGATAGCAACACTAGTGATGATGGAAACAATCATAACTGGTTAGGATTTTCTCTCTCACCCTACCACATGAAAATGGGAGAACTTACTTCTTCTGATTCTGACCCTTCTCATCATCCTAATAATAATCATCACTTTTATCATCATCATGATAACCAAGCTAATTCCTCTGCTGTTGTTCCCTCTAACTTCTACATGTCACCTTCAATGTGTTTTGGTGTTGGACAAAACACTAATTCCTTTCATTCTTCTTTATCTATGATGCCACTTAACTCTGATGGTTCTCTTTGCATTATGGAAGAAGCTCTCACTAGATCACAATCACATGTGATGATGCCTCCAAAACTAGAGGATTTTCTAGGTGGTGCAACAATGGAAACTCATCATGAGTATGAAGGACATGAAACAGAAACAATGGCTTTAAGCTTAGACAGCATTTACTATAACAACAATGTAGAGCAACAAGATCATTCTACATATTATTCAGAACTTGCTTGTCATGGAATGTATCAACAAGCATCATTGTTGGAACAAGAAGAGGAAAACAAGGAAGAAAACATGTTTTGCTTCAAAAACTTTGTGGCTCCTAGAGACTATTCTTTAGAGCAACAAAATCATCAAGTGAATAATAGTGTTGTTGATGATGGTTCTGTTGGAACAGTTAATGGTTGTGGTGAGTTACAATCTTTAAGTCTTTCTATGAGTCCTGGTTCACAATCAAGTTGTGTTACTGTTCCAACTCAGATTTCATCTTCTGGAAATGATTCTATGGTTGTTGAAGCTAAAAAAAGAGGACATGGTAAGGTTGGAAAAAAACAACCTGTTCATAGGAAATCTATTGATACATTTGGACAAAGAACTTCTCAGTTCAGAGGTGTTACAAGACATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAAGAAGGACAAACAAGGAAAGGAAGACAAGGTGGTTATGATTTGGAAGAGAAGGCTGCAAGAGCTTATGATCTTGCTGCTCTCAAGTATTGGGGTCCTTCAACTCATATAAACTTCCCGCTTGAAAAATACCAAAATGAACTTGAAGAAATGAATAACATGAATAGGCAGGAATATGTTGCTCACTTGAGAAGGAAGAGTAGTGGTTTTTCTAGGGGAGCATCAATGTATAGAGGGGTGACAAGGCACCACCAACATGGTAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAGGGACCTTTATCTTGGCACATTCAGCACACAAGAGGAAGCGGCTGAATCGTATGATGTAGCTGCAATCAAATTCCGTGGCCTAAACGCGGTCACAAATTTCGACATGTCTAAATACAATGTTGAAAAAATCATGGCTAGCAACACTCTTCTTGTCGGCGAACAAGCTAGAAGAACAACAAAAAAAATCAAGGATTGTGAAGAACCAAAACCTGAGGCTAAAGAGTGTAACAACAATGTTGTTGTGTCAAACCAAATCACAAATAGTGAAGAAATTGAAGCTGTGAACAACAATGAAACAAATAATTGGAATCAGTCCCCACAACAAGAGTCTAATACATGTGACCAAAAAACTGTAAAGTTTGGAAATTTTTCTATGTCCCTACAAGATATCATTGGGATTGATTCAGTAGGAGGATCTAGCCAAGTTTTGGTAGATGATGATTCCACCAACAAGATGAAAAGGACTCATTTTTCAAATTCATCTTCACTTGTGACTAGTTTAAGTAGCTCAAGAGAATGCAGCCCTGACAACAAAAGTACTGGCCCCACTATGCTTTTTCCAAAACCTCCAATTGGGTCAAAAAATTTGAGTCCTATTGCTACTACTAATGTTGGATCTTGGTTTCCTTCTAGTAGTGCTATCTCAATCCCTCATTTTCCGGTTTTTGCGGCTTGGAGTGACGCTTAG 1938 0.3803 MKSMMNDSNTSDDGNNHNWLGFSLSPYHMKMGELTSSDSDPSHHPNNNHHFYHHHDNQANSSAVVPSNFYMSPSMCFGVGQNTNSFHSSLSMMPLNSDGSLCIMEEALTRSQSHVMMPPKLEDFLGGATMETHHEYEGHETETMALSLDSIYYNNNVEQQDHSTYYSELACHGMYQQASLLEQEEENKEENMFCFKNFVAPRDYSLEQQNHQVNNSVVDDGSVGTVNGCGELQSLSLSMSPGSQSSCVTVPTQISSSGNDSMVVEAKKRGHGKVGKKQPVHRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDLEEKAARAYDLAALKYWGPSTHINFPLEKYQNELEEMNNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNRDLYLGTFSTQEEAAESYDVAAIKFRGLNAVTNFDMSKYNVEKIMASNTLLVGEQARRTTKKIKDCEEPKPEAKECNNNVVVSNQITNSEEIEAVNNNETNNWNQSPQQESNTCDQKTVKFGNFSMSLQDIIGIDSVGGSSQVLVDDDSTNKMKRTHFSNSSSLVTSLSSSRECSPDNKSTGPTMLFPKPPIGSKNLSPIATTNVGSWFPSSSAISIPHFPVFAAWSDA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00441 645 CDD AP2 293 357 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 MobiDBLite consensus disorder prediction 33 54 - -
Trre1g00441 645 MobiDBLite consensus disorder prediction 584 598 - -
Trre1g00441 645 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 116 524 - -
Trre1g00441 645 PRINTS Ethylene responsive element binding protein signature 295 306 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 PRINTS Ethylene responsive element binding protein signature 433 453 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 CDD AP2 392 453 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 ProSiteProfiles AP2/ERF domain profile. 294 357 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 Coils Coil 358 378 - -
Trre1g00441 645 FunFam AP2-like ethylene-responsive transcription factor 392 453 - -
Trre1g00441 645 SMART rav1_2 393 457 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 SMART rav1_2 294 363 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 ProSiteProfiles AP2/ERF domain profile. 393 451 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 Gene3D AP2/ERF domain 293 359 IPR036955 GO:0003700|GO:0006355
Trre1g00441 645 Gene3D AP2/ERF domain 393 453 IPR036955 GO:0003700|GO:0006355
Trre1g00441 645 FunFam AP2-like ethylene-responsive transcription factor ANT 293 359 - -
Trre1g00441 645 MobiDBLite consensus disorder prediction 584 607 - -
Trre1g00441 645 SUPERFAMILY DNA-binding domain 293 358 IPR016177 GO:0003677
Trre1g00441 645 Pfam AP2 domain 394 443 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 Pfam AP2 domain 294 349 IPR001471 GO:0003700|GO:0006355
Trre1g00441 645 SUPERFAMILY DNA-binding domain 392 453 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00441 Trre-Chr1 3260122 3264055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00441 12 479 AP2-EREBP Transcription Factor Family AT4G37750 53.229 3.73e-152 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre1g00441 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00441 K09285 - gmx:100798179 738.799