Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00426 ATGCCTTCATATGAGATTAATAATGCTTTGATGGGTTTTGAAACATCTTTCAAAGGTTGTGTTTTTAGTGTCTTAGACACTGAAAAAAAATTGGATCTCAAGTTAATGATTGAGGAACTTGATCCAATTCATGATGTTCCTTCTGTGTTTATATGTCCGATTTCACTTGAACCAATGCAAGAACCAGTTACACTTTGCACTGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCATAAAACATGTCCAACAACTATGCAAGAGCTTTGGGATGATTCAATTACTCCTAACAACACTCTCAAACAATTGATTCTCTCTTGGTTTTCACACAAGTACTTGGCAATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGAGTTTTGGAAACTTTGGAGACACTTAAAAAGGTAAAGGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGAAAACTTGTTGATTCTCATGTTTGTGCTAGGAAAACATTGTTGGAAAATGATGGTGTTGGTTTAGTTTGTTCTTTGTTAGGTCCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATTGGTATAATTGTGAATTTGGATTTAAGTTCAAAATTCAAGAGAATAAATCTTATGCATCCAGCTAAAGTTTCATTGGTTGTTGATATTATGAATGAAGGAACAATTGAAACAAAGATGAATTGTGCTAAATTGATTGAGATGTTGTTGATGGAGGAAGAAAAAGGAAATGAAACTAAGATTGAGATTGTGTCAAGTTTAAGTCTTTTGGTTGGATTATTGAGATTGGTAAGAGATAAGAAACATCCAAACAGTGTCTTAATTGGTCTCACATTACTAAAAAAGGTATTATCTTCACATGAATCAGTTAGAAATTCTGTTATAAGTATAGGAGCAATTCCTCAATTGATTGAGATTTTACCAAATTTGAACAATGAATGTTTGGAGATAGCACTTTATATATTGGAAATATTGTCAACAATTGAAGAAGGAAAATTGGCTTTGAAAGAATGTCCTAACATTATTCCTAATGTGGTTAAGATGTTGATGAGAGTATCAGAAAATTGTACACAATTTGCATTGTCAATATTGTGGGCTATTTACAAACTTGCACCTGAAGAATGTGCTTCAAAAGCTGTGGAAGCTGGTTTGGCTTCAAAATTATTGCTTGTGATTCAAAGTGGTTGTAATCCTGTTTTGAAACAGATGTCATCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTAGTATTTTTATTGCTAAGTGTATGCTCACTACTACAATACAATGA 1314 0.3288 MPSYEINNALMGFETSFKGCVFSVLDTEKKLDLKLMIEELDPIHDVPSVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLILSWFSHKYLAMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVDSHVCARKTLLENDGVGLVCSLLGPFTSHVVGCEAIGIIVNLDLSSKFKRINLMHPAKVSLVVDIMNEGTIETKMNCAKLIEMLLMEEEKGNETKIEIVSSLSLLVGLLRLVRDKKHPNSVLIGLTLLKKVLSSHESVRNSVISIGAIPQLIEILPNLNNECLEIALYILEILSTIEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQMSSEFLKMCSVNYSTSSIFIAKCMLTTTIQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00426 437 Gene3D - 130 421 IPR011989 -
Trre1g00426 437 SUPERFAMILY ARM repeat 137 244 IPR016024 -
Trre1g00426 437 SMART Ubox_2 49 112 IPR003613 GO:0004842|GO:0016567
Trre1g00426 437 SUPERFAMILY ARM repeat 217 421 IPR016024 -
Trre1g00426 437 ProSiteProfiles U-box domain profile. 45 119 IPR003613 GO:0004842|GO:0016567
Trre1g00426 437 PANTHER WDSAM1 PROTEIN 40 424 IPR045185 GO:0061630
Trre1g00426 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 128 IPR013083 -
Trre1g00426 437 SUPERFAMILY RING/U-box 42 114 - -
Trre1g00426 437 Pfam U-box domain 46 116 IPR003613 GO:0004842|GO:0016567
Trre1g00426 437 CDD RING-Ubox_PUB 47 97 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00426 Trre-Chr1 3095723 3097036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00426 1 437 U-box Gene Family AT3G49810 58.425 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00426 - - gmx:100803878 610.912