Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00425 ATGGCGGAACAAACTGAGAAGGCTTTTTTGAAGCAATTGAAAGTGTTCTTAAGCTCCAAGAATTCTGGGAAGGGGAAGAGACCTGGAAAGGGTGGTAATCGATTCTACAAATCTGTTGGCCTTGGTTATAAGATTCCAAGAGAGGCCATTGAAGGAACCTATATTGACAAGAAGTGTCCATACACTGGCAATGTCTCAATCCGAGGTCGTATTCTAGCCGGTACTTGTCATAGTGCTAAGATGAATAGGACCCTTATTGTTAGGAGGAATTATTTTCATTTCATTAAGAAGTATCAGAGATATGAGAAGCGTCATTCTAATATTCCTGCACACGTATCACCTTGTTTCCGGGTGAAGGAAGGAGATCATGTTATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTTAGATTCAATGTATTGAAAGTGATCCCAGCCGGATCTTCTAGTGGTGCAAAGAAGGCGTTTACAGGAATGTGA 480 0.4146 MAEQTEKAFLKQLKVFLSSKNSGKGKRPGKGGNRFYKSVGLGYKIPREAIEGTYIDKKCPYTGNVSIRGRILAGTCHSAKMNRTLIVRRNYFHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00425 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 150 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre1g00425 159 Gene3D - 1 158 - -
Trre1g00425 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre1g00425 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre1g00425 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre1g00425 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Trre1g00425 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Trre1g00425 159 NCBIfam 30S ribosomal protein S17 54 143 IPR028333 -
Trre1g00425 159 FunFam 40S ribosomal protein S11 1 158 - -
Trre1g00425 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Trre1g00425 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00425 Trre-Chr1 3083391 3084781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00425 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 86.792 5.10e-94 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00425 K02949 - gmx:547984 295.434