Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00417 ATGGCATTAGTGATGATAAAACCTCAAGATGCTAATATTATCAAACTTGAATCAGCATATTCTGATTTAGAATCACTTCTTAAATCAACAAAACAAATGGAACAAAACATTGAAACAATGGAAACAAGGTTTGATCTTTTACAAGGATCACTTACAACAGCTACAAGAAGAATACACCCTTTACAATCTTTGTCCATGTCCAGAAAAGCGCTTGATACTAGAATCAATAGAGCTATTTCCCCTGCTTTAGCTCTTCTCGAAACATTCAAACTCGCCGAATCTCTTCAAAATAATCTCCTTAACCTCTCTTCGAAACTATCTTCCGAAAAAACACATCAGAAGAGGCTTGAGAAGCTTTTAGATTACATGGATTGTGTTGATCAGTTGAATGAAGCTATTAACTCTATATGTCAAGTTGTTGAGCCAGTGATTATGAGGTTACAAGAAGTTGTTGAGTTTATAAGTAGAACAAAAGCTGCTGATCAATATAGAACACAAAGGTTAAGAGAAGCACTTATTACTCTTAAAGCACTTTATGAAACTGAGGTTGATGAAATGAGATTTGAAGGGTTGTTGGATCAAGCTTTGCTTAATATGCAAGATGAATTTGAGGCTCTTTTGCTTAAATTGAAGCATAGGAAGTTAGGAGATTTGTCACATATGCAAAATGATGATGATGAAAGTGATGATCATTTGGATGCTAGCTTTGAATTGGGATCTGAGTTGGAAATTGAAGTCTTGAGAAGAATTTCAAATATTCTTGCTGCTAATGATTGCCTGGATATATGCATTGACATCTATGTTAAGGTAAGATACAAAAGGGCTGCAAAAGCATTAATGAAGTTAAACCCTGATTACCTAAGAACATACAAACCGGAAGGAATCGATGAAATGGAGTGGGAAAACTTAGAAACATCGATAACTCTATGGACACAACACTTTGAAGTTGCAACAAAGAAGGTTCTTTTATCAGAAAAGAAACTCTGCGAAAGTGTTCTAGGCGAAATCATAGACGGACTAATCCATCCAGAATGTTTCGTGAAAATATCGGACAAGATCATGGCCGTGTTCTTTCGATTCGGAGAAGGTGTAGCCAGAAGCAACAAAGAGCCACAAAAACTCTTCAAGCTATTAGACATGTTTGAATCATTGGAGAAACTCAAGCCTCATGTACTCGAAATCTTTGATGGTGAATCCGGAGAGGATATCTGTGTGCGGTTTCGTGAACTTGAGAAGCTAATCATTGATGCATCAAGCAAAGTTTTTTGGGAATTCGGGTTGCAAATCGAAGGATATGTTGATGGTTTTCTTCCACCTTCACAAGATGGTTCTGTGCCAAAAATAGTAAGATATGCTGTTAACTATCTTAAGTACTTATCCACAGAAAATTACAGAACAACAATGGCTAAGGTTCTAAGAACAGAACAAACATGGAAAACCGAGTTGATGTTATCGTCGAAACACGAAACATACGAGGATTTATTGAACCATGCCATTTGTAATGTAATGGAGGCACTTCAAAGAAACATCGAATCCAAACGTACGAGTTGTAAAGACAAGATTTTGGTGAATATATTCATGATGAACACATATTGGTATATGTATATGAGAACAAAGAACACAGAACTTGGTGATTTGTTAGGTGAGAAATACATCAAAGAAAATTACAAAGCAGTGGCTGAAGAATCAGCTTACTTGTATCAGAAGCAAGCTTGGTTGATTTTGGTGAAGATTTTGGAGCATGATAATGATTTAATGGAACAAAAACAAGGGAAAGAAAAAAGCATTGGAAGATTAGTGAATGAAAAGTTTGAGACATTTTTTAAGTGTTTGAGTGAGGTTTGTGAAAGGCATAGAAGTATTTATAGTATACCTGATGTTGATTTGAAGGAACAAATGAGGGATTCAACAGTGAAACTTGTTGTGCCAGTTTATGCTGAATTTTTGGAGTCTTATTCAGGATTGTTGCAGAGAAAAGTTTATCCAAGTCCTCAAAGGTTACAAGGGTTGATTGGAAAAGCTTTTGGTTCTAACCATGATTGGAATTTGAATGGTGGACGAAATTCAGGTTCTTTGGAAACTGAAATTAGAAAATCTAGATGA 2103 0.3566 MALVMIKPQDANIIKLESAYSDLESLLKSTKQMEQNIETMETRFDLLQGSLTTATRRIHPLQSLSMSRKALDTRINRAISPALALLETFKLAESLQNNLLNLSSKLSSEKTHQKRLEKLLDYMDCVDQLNEAINSICQVVEPVIMRLQEVVEFISRTKAADQYRTQRLREALITLKALYETEVDEMRFEGLLDQALLNMQDEFEALLLKLKHRKLGDLSHMQNDDDESDDHLDASFELGSELEIEVLRRISNILAANDCLDICIDIYVKVRYKRAAKALMKLNPDYLRTYKPEGIDEMEWENLETSITLWTQHFEVATKKVLLSEKKLCESVLGEIIDGLIHPECFVKISDKIMAVFFRFGEGVARSNKEPQKLFKLLDMFESLEKLKPHVLEIFDGESGEDICVRFRELEKLIIDASSKVFWEFGLQIEGYVDGFLPPSQDGSVPKIVRYAVNYLKYLSTENYRTTMAKVLRTEQTWKTELMLSSKHETYEDLLNHAICNVMEALQRNIESKRTSCKDKILVNIFMMNTYWYMYMRTKNTELGDLLGEKYIKENYKAVAEESAYLYQKQAWLILVKILEHDNDLMEQKQGKEKSIGRLVNEKFETFFKCLSEVCERHRSIYSIPDVDLKEQMRDSTVKLVVPVYAEFLESYSGLLQRKVYPSPQRLQGLIGKAFGSNHDWNLNGGRNSGSLETEIRKSR 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00417 700 SUPERFAMILY Cullin repeat-like 120 673 IPR016159 -
Trre1g00417 700 Gene3D Exocyst complex component Exo70 147 681 - -
Trre1g00417 700 Pfam Exo70 exocyst complex subunit 310 669 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre1g00417 700 Coils Coil 23 43 - -
Trre1g00417 700 PANTHER EXOCYST COMPLEX PROTEIN EXO70 129 668 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00417 Trre-Chr1 3018411 3020966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00417 10 663 EXO70 exocyst subunit family AT4G31540 27.474 1.83e-70 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00417 - - aip:107605596 975.696